PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_17238A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

MYB_related

Protein Properties

Length: 293aa MW: 32432.3 Da PI: 6.5164

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_17238A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27	1e-08	152	188	11	47
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 l++++ +G g+Wk I+r++ k++t+ q+ s+ qky Oropetium_20150105_17238A 152 LFLQGLDVYGRGNWKNISRHFVKTKTPVQVSSHAQKY 188 7999********************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.956	138	193	IPR017930	Myb domain
CDD	cd00167	1.31E-5	151	189	No hit	No description
TIGRFAMs	TIGR01557	1.2E-9	151	191	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.06E-10	151	194	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-5	152	192	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-5	152	188	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MAAPAHIGPM FNKEWSPSDI AQVKSLIVMY NDNNKSASCN GDNNKMNNNK HKSIVDLLHA 60 QFPWKDRHQV SDLYVEIVLD MIECERKKMD KQSGPTTMAA AGIDLVNDNF GIPVVVEDPA 120 KKKNMEVLLG PQNMLADTKS RKTVEKHASA RLFLQGLDVY GRGNWKNISR HFVKTKTPVQ 180 VSSHAQKYFR RKESTATKKR YSINDVGLYD AEPWEAPDSS GWEALPFAAS GSYDFNDSAL 240 DLDGQGSTTH SQVWSPLLYD IGETSTNQAN PEVVGIENFA PGNQQGAFAP QD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_17238A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680780.1	7e-65	transcription factor SRM1
TrEMBL	K3ZF27	1e-61	K3ZF27_SETIT; Uncharacterized protein
STRING	Si025176m	2e-62	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP842	30	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	3e-17	MYB family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_17238A