PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17129A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MIKC_MADS
Protein Properties Length: 205aa    MW: 22719.5 Da    PI: 4.9004
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17129AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.72e-251059251
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               rien   rqvtfskRr g++KKAeEL vLCda+v +i+fs tgkl  ++s
  Oropetium_20150105_17129A 10 RIENVAARQVTFSKRRRGLFKKAEELAVLCDADVTLIVFSATGKLSQFAS 59
                               8*********************************************9986 PP
2K-box22.25.8e-09871441670

  




Protein Features
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3D Structure
 

Database
Entry ID
E-value
Start
End
InterPro ID
Description



PROSITE profilePS5006628.273161IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-34160IPR002100Transcription factor, MADS-box
CDDcd002657.72E-36279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-28376IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-24323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-243859IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.30.460.102.3E-44096No hitNo description
PROSITE profilePS512977.88788188IPR002487Transcription factor, K-box
PfamPF014862.0E-796145IPR002487Transcription factor, K-box

 





Gene Ontology ? help Back to Top




GO Term
GO Category
GO Description



GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity

 
 




Sequence ? help Back to Top




Protein Sequence    Length: 205 aa    
Download sequence    Send
to blast





MAREKREIRR IENVAARQVT FSKRRRGLFK KAEELAVLCD ADVTLIVFSA TGKLSQFASK  60
SSSMNEIIDK YNTQAKNLQK SQQPSLDLNL EHSKNADLND QLAEASLQLR QMRGEELERL  120
SAEELHQMEK KLEAGLHRVL TTKGIQLEDE NMPQVPIAVT GMVATDTENV LAEDEQSSES  180
VMTALHSGSS PDYDDGSDTS LKLA*





  




3D Structure ? help Back to Top



Structure
 




PDB ID
Evalue
Query Start
Query End
Hit Start
Hit End
Description



5f28_A1e-16171169MEF2C
5f28_B1e-16171169MEF2C
5f28_C1e-16171169MEF2C
5f28_D1e-16171169MEF2C
 
Search in ModeBase

   

 
  
  







Functional Description  ? help
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Source
Description



UniProtProbable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}.
 











Cis-element
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SourceLink
PlantRegMapOropetium_20150105_17129A








Regulation -- PlantRegMap  ? help
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Source
Upstream Regulator
Target Gene



PlantRegMapRetrieve-
 






 
 




Annotation -- Protein
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Source
Hit ID
E-value
Description



RefseqXP_004964865.11e-102MADS-box transcription factor 55 
SwissprotQ9XJ665e-91MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLA0A368QS861e-100A0A368QS86_SETIT; Uncharacterized protein
STRINGBRADI3G58220.14e-99(Brachypodium distachyon)

 





Orthologous Group
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LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
  




Best hit in Arabidopsis thaliana ? help
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Hit ID
E-value
Description



AT2G22540.15e-58MIKC_MADS family protein


 

 




Publications
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  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]
    3.