 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Oropetium_20150105_17090A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 315aa MW: 33171 Da PI: 9.9648 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_17090A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.8 | 2.2e-19 | 131 | 185 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q +Lee+F+ +++++ +++ LA++lgL rqV vWFqNrRa+ k
Oropetium_20150105_17090A 131 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTK 185
678899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 124.9 | 3.8e-40 | 131 | 221 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84
+kk+rlsk+q+++LEe+F+++++L+p++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke
Oropetium_20150105_17090A 131 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLQKEL 214
69********************************************************************************** PP
HD-ZIP_I/II 85 eeLreelk 92
++Lr +lk
Oropetium_20150105_17090A 215 ADLR-ALK 221
***9.555 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 315 aa
Download sequence Send
to blast |
MTMPQQQQQS SLDLGLSLGL SSQGSLSSST TTAGSSGQLS PWAAALSSVV GDVMRRDQQQ 60
APPPPSAAPA DPNQGTMMTM MRASTSPDSA AALSSGDSGT KRELERTGSG SVRAGGAGSD 120
EEDGADGAGG RKKLRLSKDQ AAVLEECFKT HSTLNPKQKV ALANRLGLRP RQVEVWFQNR 180
RARTKLKQTE VDCEYLKRWC ERLADENKRL QKELADLRAL KTAAPSPSSS SSTAAQSSSA 240
AATLTMCPSC RRVATAGAGG ASANQQLQQC HRKSNNNVLP NHCQFFPGGA VDRTGHQQST 300
WSAAAAPLVT RELF*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 179 | 187 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP093288 | 1e-146 | FP093288.1 Phyllostachys edulis cDNA clone: bphylf053m07, full insert sequence. |
