 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_17088A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 288aa MW: 29687.3 Da PI: 9.6516 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_17088A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.7 | 1.2e-19 | 91 | 145 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q +Lee+F+ +++++ +++ LA++lgL rqV vWFqNrRa+ k
Oropetium_20150105_17088A 91 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALATSLGLRPRQVEVWFQNRRARTK 145
788899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 126.3 | 1.3e-40 | 91 | 179 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84
+kk+rlsk+q+++LEe+F+++++L+p++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL kev
Oropetium_20150105_17088A 91 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALATSLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCEQLAEENRRLGKEV 174
69********************************************************************************** PP
HD-ZIP_I/II 85 eeLree 90
+eLr +
Oropetium_20150105_17088A 175 AELR-A 179
***9.4 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 288 aa
Download sequence Send
to blast |
MAPQSLDLGL SLGLGLASAS QPAISFCYSG NNNAGGVIAV PDREVSPAAE RRCGSPAGSP 60
VSSGSAGKRA AAERSAGGSG DDELDEDGGA RKKLRLSKDQ AAVLEECFKT HHTLTPKQKV 120
ALATSLGLRP RQVEVWFQNR RARTKLKQTE VDCEYLKRWC EQLAEENRRL GKEVAELRAL 180
NAVAAAAPAP AAAPPLTTLS MCLSCRRVAP SSSSAPAPHN NATRNNVLAA HHHQHAAAPS 240
NAAAGGVGVA SSSAAAALPG HHRQFFCGFR EVGAAAYGAS SSVKAAR*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 139 | 147 | RRARTKLKQ |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU968120 | 1e-125 | EU968120.1 Zea mays clone 314746 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds. |
