PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_17058A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 26871.4 Da PI: 7.0651 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.4 | 3.3e-05 | 70 | 93 | 3 | 26 |
HHHHHHHHHHHHHHHHHHHHHHCT CS HLH 3 rahnerErrRRdriNsafeeLrel 26 r+h e+E+rRR+ri+s +++Lr + Oropetium_20150105_17058A 70 RNHREAEKRRRERIKSHLDRLRNI 93 78********************75 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 8.3E-4 | 70 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-9 | 70 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 252 aa Download sequence Send to blast |
MFPAEVSPLA GGAGAAARQG DVPLLPPFFM AASIWPTTGG SSSASEAEDE XXXXXXXXXX 60 XHDRALAASR NHREAEKRRR ERIKSHLDRL RNIDKASLLA KAVERVRDLK QRVGEATAPA 120 HLFPTEHDEI VVLASGGGAV FEASVCCDDR SDLLPELIET LRALRLRTLR AEMATLGSRV 180 RNVLVLARET NGDDGGYGGS EDLASSIDGG NGGGDFLKEA LRALVERPGA GGAGDRSKRR 240 RVSNMNMQAA S* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 237 | 241 | KRRRV |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_17058A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ727966 | 1e-88 | KJ727966.1 Zea mays clone pUT6079 bHLH transcription factor (bHLH48) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981312.1 | 2e-85 | transcription factor bHLH106-like | ||||
Swissprot | O80674 | 3e-40 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A368SD61 | 5e-84 | A0A368SD61_SETIT; Uncharacterized protein | ||||
STRING | Sb01g003830.1 | 3e-81 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9578 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41130.1 | 2e-24 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_17058A |
Publications ? help Back to Top | |||
---|---|---|---|
|