PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16831A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 526aa    MW: 57858.2 Da    PI: 5.8046
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16831AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.41e-21248568128
                        NAM  68 yatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                y+ g+r+nr+t++gyWkatgkd+ + s+  g+l+g+kktLvf++grap+g++t W+mheyr 
  Oropetium_20150105_16831A  24 YPGGHRSNRSTAAGYWKATGKDRLIRSRpAGTLIGIKKTLVFHRGRAPRGRRTAWIMHEYRT 85 
                                67799**********************989999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.8131106IPR003441NAC domain
SuperFamilySSF1019411.83E-306106IPR003441NAC domain
PfamPF023651.5E-93084IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MSSSPAAAPL PVGFRFRPTD EELYPGGHRS NRSTAAGYWK ATGKDRLIRS RPAGTLIGIK  60
KTLVFHRGRA PRGRRTAWIM HEYRTTEPQL HHSQDGSFVL YRLFNKHEEE TNLEDAESPS  120
TSSPAHLKMM KSENSAHLLT SVDKNDPTAP QVTTRSSFDI NSFLVYHEKD PVLDVLAHVP  180
SLQPDKTLDG FPTITSPMRP YTDHPFLANA EGQDLSEYLD SIIACQEMKG ALSCTTGDAE  240
MNPTAMLMPS GSSNDKVVDD TGAAHCSSGT KILQKDTCDV SHGTDVAYSA SAHLSHLYHH  300
SLLHSTSAEM EQPYIAAQFS AGSWTPYPQH LFDDVVDPYG SNMTSSDAFD GLEGLVDEPM  360
MQQFADSNVQ QGTAARRIRL VHSVQKATVT EPVLTSHLES EDEAGSSYRG SEDEAGSSYS  420
VGNLSTIHDK DYTNLISQTV AGEATHAQDG RFLPPQVDYL VEVTEKSRNF SFDVHALSTY  480
LQMISCFTKP ISSRDSNRKT QSRVRMSVMT YRTVAVCLEN LPIED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-201410777169NAC domain-containing protein 19
3swm_B3e-201410777169NAC domain-containing protein 19
3swm_C3e-201410777169NAC domain-containing protein 19
3swm_D3e-201410777169NAC domain-containing protein 19
3swp_A3e-201410777169NAC domain-containing protein 19
3swp_B3e-201410777169NAC domain-containing protein 19
3swp_C3e-201410777169NAC domain-containing protein 19
3swp_D3e-201410777169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16831A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304841.11e-145NAC domain-containing protein 69 isoform X2
TrEMBLA0A1E5USQ91e-147A0A1E5USQ9_9POAL; Protein NTM1-like 9
STRINGGRMZM2G163914_P021e-131(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134132529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.19e-31NAC domain containing protein 62