PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_16685A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

HRT-like

Protein Properties

Length: 484aa MW: 52917.3 Da PI: 9.4502

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_16685A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	56	6.7e-18	277	307	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv ledGs C ++Pv+gRKRC HKG+R+ Oropetium_20150105_16685A 277 VCGVVLEDGSSCLEEPVQGRKRCNLHKGRRV 307 7*****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MPAAAAAARL KREDCPRTKH DSLFSPWKVL VGASDWEDHS SGKEGVQRYR IRNLPDNFPG 60 LYELGVAGAS DEGVRLQRRD SRGVVVVYLG QADNVRARLQ QYGRTGSHLD TGNSAGKDEV 120 DALTAEPGLF REVFARGYSM VFRCALNGAC RREEILLKLE YRAVSHASSL LSRVHDMKQK 180 IFGEKPGIKI KGSGSIETSS GIMSSMLPRV RTLVRFRPHL VNSDNGGSEA IDVVLNRPYH 240 GHTSGNRQPH GRRSEGYKVK RIDVTKRRTV PIQNSSVCGV VLEDGSSCLE EPVQGRKRCN 300 LHKGRRVKGN PKSSSSSFVC QVEVPNTESV PQLNKNLSKS HHAQENEFMV KKLDATVKGS 360 STQSSSCEAK VVKTGEPSTE DAAHETSGSG DSGIYGQKSS YAESQSQEQP SGRIWFELIK 420 AQENLVSTHL SGRPECPTRV ADDVAPICGA TTDNGSFRAS RDGCEKLSEM TVTGVSYSRR 480 SGWP

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MPAAAAAARL KREDCPRTKH DSLFSPWKVL VGASDWEDHS SGKEGVQRYR IRNLPDNFPG  60
LYELGVAGAS DEGVRLQRRD SRGVVVVYLG QADNVRARLQ QYGRTGSHLD TGNSAGKDEV  120
DALTAEPGLF REVFARGYSM VFRCALNGAC RREEILLKLE YRAVSHASSL LSRVHDMKQK  180
IFGEKPGIKI KGSGSIETSS GIMSSMLPRV RTLVRFRPHL VNSDNGGSEA IDVVLNRPYH  240
GHTSGNRQPH GRRSEGYKVK RIDVTKRRTV PIQNSSVCGV VLEDGSSCLE EPVQGRKRCN  300
LHKGRRVKGN PKSSSSSFVC QVEVPNTESV PQLNKNLSKS HHAQENEFMV KKLDATVKGS  360
STQSSSCEAK VVKTGEPSTE DAAHETSGSG DSGIYGQKSS YAESQSQEQP SGRIWFELIK  420
AQENLVSTHL SGRPECPTRV ADDVAPICGA TTDNGSFRAS RDGCEKLSEM TVTGVSYSRR  480
SGWP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_16685A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802669.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A0A9PBU5	0.0	A0A0A9PBU5_ARUDO; Uncharacterized protein
STRING	Pavir.Ba01074.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7948	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-47	effector of transcription2

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_16685A