PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16653A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 736aa    MW: 81374.4 Da    PI: 6.944
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16653AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-055577123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++C+ Cgk F r  nL+ H r H
  Oropetium_20150105_16653A 55 FVCEVCGKGFQRDQNLQLHRRGH 77
                               89******************988 PP
2zf-C2H215.74.4e-05134155223
                                EETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                 Cp Cgk++  + +Lk H +t+
  Oropetium_20150105_16653A 134 ACPRCGKRYAVQADLKAHAKTC 155
                                6******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.01E-85477No hitNo description
Gene3DG3DSA:3.30.160.601.6E-55577IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0145577IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6355577IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SMARTSM003558698128IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-5121154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.01E-8128153No hitNo description
PROSITE profilePS501578.663133161IPR007087Zinc finger, C2H2
SMARTSM0035590133153IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MTPNPTEPEA GPEQPGPVAE APAPVKKKRN LPGTPDPDAE VIALSPGTLL ATNRFVCEVC  60
GKGFQRDQNL QLHRRGHNLP WRLRQRGPGA APPRRRVYVC PEPGCVHHDP TRALGDLTGI  120
KKHFCRKHGE KRWACPRCGK RYAVQADLKA HAKTCGTREY RCDCGTLFTR RDSFVTHRAF  180
CGALVEETGR MLAVPVPPSP RPPDLETEEN VDKDKEKKED EEDDNSAVPE TEQPRRMEAV  240
TEKPQCTLSP PPLPPEPQHS PSPPPLPQQE PQPLRSRPPL PPQEPLSLCS PPPFLPQQQQ  300
QQQQPVVAVV PNVDERKVVS ELTVLAKQEE EADQDEGTCI QEVDHYKDTD TELKGSNLLN  360
KDTPMLPCFL PSPSEAIGTD VSSTTCGAGG SVSNSIAPST TTNTFAGLFS SATRSTTSQS  420
RSLRDLIGVD PTFLCLAIGP PSPLFPQTSA SNPCSFAPPP APHMSATALL QKATEVGASQ  480
SSSSFLKEFG LGSSSSSSPP SKVPQPQGMF TDNNTQPWHR TSNQHMDMER HRSNQQMEVE  540
HHRSNQQMEV EHHRSNQHVG MEHRRSNQHM EMDHRRINQH MEMERRHRSN QPMEMERRHR  600
SNQQMDMEHH HWSTQQMEVE RLQSNQQMEM ERLRSNQQMG MEQRSMLSSN LGLGLAYQTG  660
NSGLPDLMMG PSPLFGPKPA TLDFLGLGIG GTMGGSTANG GLPALMVRGE LDMGSAQPAP  720
WMEDGKRKTN SRTIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-30129191365Zinc finger protein JACKDAW
5b3h_F4e-30129191365Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16653A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0983990.0FP098399.1 Phyllostachys edulis cDNA clone: bphyem204a15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169281.10.0uncharacterized protein LOC100383144
TrEMBLA0A1E5VQB00.0A0A1E5VQB0_9POAL; Zinc finger protein MAGPIE
STRINGGRMZM2G022213_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118292836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.12e-92C2H2 family protein