 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Oropetium_20150105_16555A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
NAC |
| Protein Properties |
Length: 449aa MW: 48672.6 Da PI: 7.0783 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_16555A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 172.1 | 1.7e-53 | 33 | 162 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyW 83
lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyW
Oropetium_20150105_16555A 33 LPPGFRFHPTDEELVVHYLKKKAASMPLPV-TIIAEVDLYKFDPWELPEKASFgTEQEWYFFSPRDRKYPNGARPNRAATSGYW 115
79****************************.89***************544432677*************************** PP
NAM 84 katgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
katg+dk+++++ ++e+vg+kk Lvfy+g+ pkg kt+W+mheyrl
Oropetium_20150105_16555A 116 KATGTDKPIMASggSREKVGVKKALVFYRGKPPKGLKTNWIMHEYRL 162
***********9777788***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 449 aa
Download sequence Send
to blast |
MMRSMESTDS SSGSVPPQRT QQPGPVAVPA PYLPPGFRFH PTDEELVVHY LKKKAASMPL 60
PVTIIAEVDL YKFDPWELPE KASFGTEQEW YFFSPRDRKY PNGARPNRAA TSGYWKATGT 120
DKPIMASGGS REKVGVKKAL VFYRGKPPKG LKTNWIMHEY RLTDAASXXX XXXXXXXXXX 180
XXXXXXXXXX XXXXXSLIYI GIDWLNYWPG VTDRVLVSVS QLDDWVLCRI YKKINKHGVG 240
DQLRNMECGG EGSVEDATVS AYQSHAAAVA GMTLGGANYT SLLHHHHEDN FLDGLLTTVE 300
DGGGLSAAGA ASLSQLAAVT RASNTAVTKQ LLAPPAAATP FNWLDASSSG IAILPPAKRY 360
HGFSRDNADG STSLSSPAAE GNQLPAGSID GAGGSGTAAI PTTFLNPXXX XXXXXXXXXX 420
XXXXXXXXLP PETAFQQPYQ LSGVNWNP*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-63 | 33 | 233 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-63 | 33 | 233 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-63 | 33 | 233 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-63 | 33 | 233 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 2e-63 | 33 | 233 | 17 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 2e-63 | 33 | 233 | 17 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT085989 | 1e-143 | BT085989.1 Zea mays full-length cDNA clone ZM_BFc0095M07 mRNA, complete cds. |
| GenBank | BT086467 | 1e-143 | BT086467.1 Zea mays full-length cDNA clone ZM_BFc0169O24 mRNA, complete cds. |
