PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16416A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 323aa    MW: 35685.7 Da    PI: 4.8568
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16416AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH130.00018152172727
                                HHHHHHHHHHHHHHHHHHCTS CS
                        HLH   7 erErrRRdriNsafeeLrell 27 
                                ++ErrRR+r+N++++ Lr+++
  Oropetium_20150105_16416A 152 MAERRRRKRLNDRLSMLRSVM 172
                                79****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.337145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-11149211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-5151194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-7152206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.63E-4239277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MELDEQAFLE EILSLRRDAW ECNAMGDFFA PAAAAAAMDC SFQERHQPPP SVSVLPTFTA  60
SYQHQHQQLG FDCLSEVYSA AAFGGTNAVD YGGEMGFLDA IEPKAPLVEG AGLGLGVCKV  120
EPGLAESAGG VAPPAPVSKK KRVEGMPSKN LMAERRRRKR LNDRLSMLRS VMDRTSILGD  180
TIDYMKELLE RIKQLQEEIE QEQQEAPGVL SVFRELNPNE MVGRNTPKFQ VERKEDGETR  240
VEIYCASKPG LLLSTVSTLD TLGLEIQQAV VSCFNDFGMH ACCSDRMVQR ERISADMIKQ  300
ELLFAIAIIG TAVQNHYRFT RC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139159KKRVEGMPSKNLMAERRRRKR
2153160ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16416A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0429111e-135BT042911.1 Zea mays full-length cDNA clone ZM_BFc0062P05 mRNA, complete cds.
GenBankEU9635381e-135EU963538.1 Zea mays clone 263876 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142220.11e-151uncharacterized LOC100274388
SwissprotQ9LSL18e-53BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A3L6S1271e-154A0A3L6S127_PANMI; Transcription factor bHLH93-like isoform X2
STRINGSi006877m1e-142(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-34beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]