PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

HD-ZIP

Protein Properties

Length: 229aa MW: 25405.6 Da PI: 9.5413

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_16258A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3e-18	93	147	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F++++ +s++e+ +LA++++Lt rqV vWFqNrRa+ k Oropetium_20150105_16258A 93 RKKLRLTKEQSALLEDTFRSHNILSHAEKHHLARRVNLTPRQVEVWFQNRRARTK 147 678899***********************************************98 PP
2	HD-ZIP_I/II	112.8	2.2e-36	93	181	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 +kk+rl+keq++lLE++F++++ L++ +K++lar+++l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l++en+rL++e Oropetium_20150105_16258A 93 RKKLRLTKEQSALLEDTFRSHNILSHAEKHHLARRVNLTPRQVEVWFQNRRARTKLKQTEVDCELLKRCCKSLSDENQRLKREL 176 69******************************************************************************** PP HD-ZIP_I/II 85 eeLre 89 eL++ Oropetium_20150105_16258A 177 VELQR 181 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-18	82	148	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.1E-19	87	150	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.844	89	149	IPR001356	Homeobox domain
SMART	SM00389	4.6E-14	91	153	IPR001356	Homeobox domain
CDD	cd00086	1.22E-14	93	150	No hit	No description
Pfam	PF00046	1.5E-15	93	147	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	124	147	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.4E-8	149	180	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	4.1E-14	149	193	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MLCSSSCMEE EDLGAWLGLG IGSGCGLRGS HGERWPSLQF PNNQEDETMR GRDHKKAAVN 60 NTTDQKGGRG KRLKAAIAID DNQDDADANG CMRKKLRLTK EQSALLEDTF RSHNILSHAE 120 KHHLARRVNL TPRQVEVWFQ NRRARTKLKQ TEVDCELLKR CCKSLSDENQ RLKRELVELQ 180 RSAAAARRHH VQFPRAADAS GTTSICPSCA KVTVTSGGET SKRSSHSS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	149	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_16258A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966133.1	2e-76	homeobox-leucine zipper protein HOX18
Swissprot	Q5Z6F6	2e-56	HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBL	A0A368QXX7	6e-75	A0A368QXX7_SETIT; Uncharacterized protein
STRING	Si007238m	4e-75	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8130	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	4e-44	homeobox from Arabidopsis thaliana

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_16258A