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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Oropetium_20150105_16102A |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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| Family |
NF-YB |
| Protein Properties |
Length: 256aa MW: 27082.5 Da PI: 6.787 |
| Description |
NF-YB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_16102A | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YB | 144.1 | 3.4e-45 | 31 | 125 | 2 | 96 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
reqd+++Pianv+rim+ vlP +aki++dake+vqecvsefisf+t+ea+d c+ e+rkt++++d+l a+ lGf+dyv pl++
Oropetium_20150105_16102A 31 REQDQLMPIANVVRIMRGVLPPHAKIADDAKEVVQECVSEFISFITGEANDWCRGEHRKTVTAEDILSAMDRLGFDDYVSPLRA 114
89********************************************************************************** PP
NF-YB 86 ylkkyrelege 96
y+++ re+eg
Oropetium_20150105_16102A 115 YVRRMRECEGR 125
********985 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 256 aa
Download sequence Send
to blast |
MAEPKTPTID AAAATEPPPI PAARTEPVVI REQDQLMPIA NVVRIMRGVL PPHAKIADDA 60
KEVVQECVSE FISFITGEAN DWCRGEHRKT VTAEDILSAM DRLGFDDYVS PLRAYVRRMR 120
ECEGRGGGSG GAHQTRAAHH GRGGSVPMIQ GLQTHTQPAA FISCTAALSH RYGVVAPPLY 180
QDSRSAAPYS GVARRVVLGD EPSSPMAVAS YGGGPLPLTQ GNHGGRVCNA DEVSSSPNGE 240
LAAAEATSQR PHYPK*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
| Publications
? help Back to Top |
- Jia H,McCarty DR,Suzuki M
Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
Plant Physiol., 2013. 163(3): p. 1293-305
[PMID:24043445] - Kim HU, et al.
Ectopic overexpression of castor bean LEAFY COTYLEDON2 (LEC2) in Arabidopsis triggers the expression of genes that encode regulators of seed maturation and oil body proteins in vegetative tissues.
FEBS Open Bio, 2013. 4: p. 25-32
[PMID:24363987] - Gnesutta N,Saad D,Chaves-Sanjuan A,Mantovani R,Nardini M
Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants.
Mol Plant, 2017. 10(4): p. 645-648
[PMID:27871811] - Li D, et al.
MYB89 Transcription Factor Represses Seed Oil Accumulation.
Plant Physiol., 2017. 173(2): p. 1211-1225
[PMID:27932421] - Zhao H, et al.
The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
Front Plant Sci, 2016. 7: p. 2045
[PMID:28119722] - Han JD, et al.
Evolutionary Analysis of the LAFL Genes Involved in the Land Plant Seed Maturation Program.
Front Plant Sci, 2017. 8: p. 439
[PMID:28421087]
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