PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

TCP

Protein Properties

Length: 320aa MW: 32301.3 Da PI: 6.5082

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_15889A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	87.5	3e-27	1	156	24	133
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.................. 88 ++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ Oropetium_20150105_15889A 1 MPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSFSIPahlraaaagglpaassrf 84 9**********************************************9998888999999977777888888899999999999 PP TCP 89 ........................kaaksaakskksqksaasalnlak.esrakarar.are.rtrekmrik 133 ++++ + s +s + l+++ +s+a a+a+ +r+ r++++ +++ Oropetium_20150105_15889A 85 gggawdrvvglgfggagaeqgpasTTSSASSPLLLSFHSGSVGLDVSPsSSSAAANADlSRKrRWEQEIQQQ 156 999999999999999999999986333333356666666666688877444555555544443333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.6E-31	1	160	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	20.552	1	39	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MPAICAARVF QLTRELGHKT DGETIEWLLQ QAEPAVIAAT GTGTIPANFT SLNISLRSSG 60 SSFSIPAHLR AAAAGGLPAA SSRFGGGAWD RVVGLGFGGA GAEQGPASTT SSASSPLLLS 120 FHSGSVGLDV SPSSSSAAAN ADLSRKRRWE QEIQQQQQQY QQQMAGYTQS QMPPGTVWMM 180 PSSSGNNNAQ QAGAGGTESI WTFPQAAGNG GGGGGAATSS AVYRGMPSGL HFMNFPAPMA 240 LLPGGGQHHQ LGFATTDNGG GGGEGHMGVL AALNAYRAHA AAAAAAQNGA EESSQQQQQQ 300 HRQHGGGGEQ QESISASDS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269\|PubMed:17953649, ECO:0000269\|PubMed:21668538, ECO:0000269\|PubMed:22155632, ECO:0000269\|PubMed:22267487, ECO:0000269\|PubMed:24689742, ECO:0000269\|PubMed:25655823, ECO:0000269\|PubMed:25757472, ECO:0000269\|PubMed:28132837}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_15889A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269\|PubMed:17953649}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054532	1e-82	BT054532.1 Zea mays full-length cDNA clone ZM_BFc0140K14 mRNA, complete cds.
GenBank	KJ726836	1e-82	KJ726836.1 Zea mays clone pUT3376 TCP transcription factor (TCP10) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001146064.1	4e-96	uncharacterized protein LOC100279595
Swissprot	Q93Z00	1e-33	TCP14_ARATH; Transcription factor TCP14
TrEMBL	A0A0A9RPQ8	1e-104	A0A0A9RPQ8_ARUDO; Uncharacterized protein
STRING	GRMZM2G142751_P01	1e-103	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3744	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	5e-27	TCP family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_15889A

Publications ? help Back to Top
Steiner E, et al. The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin. Plant Physiol., 2016. 171(2): p. 1485-94 [PMID:27208284] Yang L, et al. Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence. Cell Host Microbe, 2017. 21(2): p. 156-168 [PMID:28132837] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]