PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15661A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 372aa    MW: 39655.6 Da    PI: 9.0352
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15661AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.61.4e-333589155
                    G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                               kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  Oropetium_20150105_15661A 35 KPRLRWTAELHDRFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 89
                               79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.4573292IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-323292IPR009057Homeodomain-like
SuperFamilySSF466898.42E-173491IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-243590IPR006447Myb domain, plants
PfamPF002492.3E-83787IPR001005SANT/Myb domain
PfamPF143791.8E-23126171IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010088Biological Processphloem development
GO:0010089Biological Processxylem development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MFPSNSKKPS TTTSNDRPMC VQGDSGGLVL TTDPKPRLRW TAELHDRFVD AVAQLGGPDK  60
ATPKTIMRVM GVKGLTLYHL KSHLQKFRLG KQQKEFGDHS AAMEMQRNVA SSSGAMARSM  120
SDRSVNVNEA LRIQMEVQRR LHGELEVQKH LQMRVEAQGK YMQSILEKAY QALGSSECAT  180
WPTGYKSLGS SQAVLDIGGG GGSMGFSSSL QDLHFYGGNN SYMDQLMLQM DQRPTLMDHN  240
FLTLGESGTG GSSSVSNNNK KGGPASNHCS STSNSSMMWA AAGEEQAKSA AAGGHLQMGS  300
SSTGIIMEPI TNAYDGAKSI MSADSMGSKG FEGSSSKIEM MSSPPSQHAP AGSERMSSPM  360
VGAQARNLSY S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-183591157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-183591157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-183591157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-183591157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15661A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9690500.0EU969050.1 Zea mays clone 325800 myb family transcription factor-related protein mRNA, complete cds.
GenBankKJ7280540.0KJ728054.1 Zea mays clone pUT6200 G2-like transcription factor (GLK34) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810576.11e-170myb family transcription factor APL-like
SwissprotQ9SAK58e-81APL_ARATH; Myb family transcription factor APL
TrEMBLA0A3L6S4C01e-172A0A3L6S4C0_PANMI; Myb family transcription factor APL-like
STRINGPavir.Db00488.1.p1e-168(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25043890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.21e-73G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]