PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15626A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family M-type_MADS
Protein Properties Length: 137aa    MW: 15247.1 Da    PI: 10.3689
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15626AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.73.4e-193982245
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                               ++ +k + qv fskR+ gi+KKA+E+  LCda+vaviifs++g+
  Oropetium_20150105_15626A 39 PVHDKARCQVIFSKRKSGIFKKASEIVSLCDAKVAVIIFSNSGR 82
                               567999***********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-173089IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.9273090IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-173185IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-143252IPR002100Transcription factor, MADS-box
PfamPF003197.5E-194184IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-145267IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-146788IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MTKASKNKEA TTMTKASQLK EAMAVKKQSK GRQVIPIEPV HDKARCQVIF SKRKSGIFKK  60
ASEIVSLCDA KVAVIIFSNS GRPYAXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXAVPDR  120
EEVEATELSA SYKYNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15626A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-15AGAMOUS-like 29