PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15590A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 651aa    MW: 70886.9 Da    PI: 8.1209
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15590AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.5e-06114134526
                                --SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                +C+ +   G+C+ G++C++ H+
  Oropetium_20150105_15590A 114 ECNMYKM-GFCPNGPTCRYKHV 134
                                6666666.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5635582IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-45581IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-45782IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-65780IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.59683108IPR000571Zinc finger, CCCH-type
SMARTSM003560.0183109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.577109136IPR000571Zinc finger, CCCH-type
SMARTSM003560.0064111135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5088257.562245380IPR007275YTH domain
PfamPF041463.1E-44245379IPR007275YTH domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:1900363Biological Processregulation of mRNA polyadenylation
GO:2000031Biological Processregulation of salicylic acid mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003723Molecular FunctionRNA binding
GO:0004521Molecular Functionendoribonuclease activity
GO:0005516Molecular Functioncalmodulin binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MEDGDGGLSF DFEGGLDSAP PTGAHAPSTA DPGAAGGGFG AGDAPGYGRG RGRGSFRQTV  60
CRHWLRGLCM KGEACGFLHQ FDKARMPVCR FFRDFGECRE PDCAYKHSYD DVKECNMYKM  120
GFCPNGPTCR YKHVKLPGPP PPVEEVLQKI LQMRTFNKFG PHRNNYNQQM ERPPAPQGSG  180
LPNQNSTDNA TAPAQPAGVQ QAQTLNQQTP QQQQKPTATD QTQGVSNGLS NQAARIATPL  240
PQGPSRYFIV KSCNRENLEI SVQQGIWATQ RSNEAKLNEA FESIENVILI FSINRTRNFQ  300
GCAKMTSRIG GYIGGGNWKS AHGTAHYGRN FSVQWLKLCE LSFQKTHHLR NPYNDNLPVK  360
ISRDCQELEP FIGEQLASLL YLEPDSELTA MLVAAEAKRE EEKAKGVSAD EAADNQDIVL  420
FXXXXXXXXX XSEEEDEGNG QESQGRGRGR GMMWPPQMPM PRGIGPMMGG RGFPPNMMGD  480
GFGFNGGFGM PDPFGMPRGF PPFGGPRFPG DFARGGPMPG MVFPGRLPQP GGPFPMGLDM  540
MMGPGRGPMM GGMGLGGPGR PNRPMGMAPF MPPPPPNSRG PKREQRRPGG DRNERYETSS  600
DQGSRGHENT GNSGADGARS QAGDRYGRSS LRDDDSESEE EAAPRRSRKR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zuu_A1e-101230408218030-kDa cleavage and polyadenylation specificity factor 30
5zuu_B1e-101230408218030-kDa cleavage and polyadenylation specificity factor 30
5zuu_C1e-101230408218030-kDa cleavage and polyadenylation specificity factor 30
5zuu_D1e-101230408218030-kDa cleavage and polyadenylation specificity factor 30
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1580586PKREQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15590A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644405.10.0zinc finger CCCH domain-containing protein 45
SwissprotQ0DA500.0C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45
TrEMBLA0A0P0X0B10.0A0A0P0X0B1_ORYSJ; Os06g0677700 protein
STRINGOS06T0677700-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59892428