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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_15481A |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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| Family |
MYB |
| Protein Properties |
Length: 430aa MW: 47329.7 Da PI: 6.2348 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_15481A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 55 | 1.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+l + ++++G g+W+++++ g+ R++k+c++rw +yl
Oropetium_20150105_15481A 14 KGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
678*******************************************97 PP
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| 2 | Myb_DNA-binding | 47.1 | 5.6e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg++++eE++l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
Oropetium_20150105_15481A 67 RGAFSQEEEDLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
89********************.*********.*********9986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0001944 | Biological Process | vasculature development |
| GO:0009733 | Biological Process | response to auxin |
| GO:0010089 | Biological Process | xylem development |
| GO:0010119 | Biological Process | regulation of stomatal movement |
| GO:0010214 | Biological Process | seed coat development |
| GO:0048364 | Biological Process | root development |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 430 aa
Download sequence Send
to blast |
MGRHSCCFKQ KLRKGLWSPE EDEKLMNHIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60
LRPDLKRGAF SQEEEDLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQKG 120
IDPNTHKPLA EADQSGAAPT ISTERTSGSS DANPSSTGAL GNLSHLLNET AQSSMLLPVY 180
DKNHAETPNL PRPKVPPKEL FLDQLAAGHE SPSTCRSSGP TLYFPFQQPL GYTSEGGSGD 240
GATMNSLWFN QSDFNCSTIS TVMPPVSPSA LSTSMGLNLP PDNPQHGGTS IGSASVDSFY 300
WDGTNPSSSS STGSRGSNSM GFEPQSTSSI LENSVFPWTD IGQEKDTRSH LVEELKWPDL 360
LHGTFAETTT SMQNRSQSLY DDMIKAESQF NMEGICASWF QNQQPQQQLT APDMYDKDLQ 420
RMQLSFENI*
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