PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15425A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TALE
Protein Properties Length: 300aa    MW: 32636.8 Da    PI: 5.2913
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15425AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.84.2e-092302632255
                                SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                   Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                 +yp+++++ +LA+ +gL+ +q+ +WF N+R ++
  Oropetium_20150105_15425A 230 WPYPTEDDKVRLATMTGLDPKQINNWFINQRKRH 263
                                59*****************************885 PP
2ELK315.5e-11183204122
                        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                ELK++Ll+KYsg+L+ L++EF+
  Oropetium_20150105_15425A 183 ELKEMLLKKYSGSLSRLRSEFL 204
                                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-204488IPR005540KNOX1
PfamPF037901.6E-204686IPR005540KNOX1
SMARTSM012567.3E-2492143IPR005541KNOX2
PfamPF037919.6E-2196142IPR005541KNOX2
SMARTSM011882.0E-5183204IPR005539ELK domain
PfamPF037896.4E-8183204IPR005539ELK domain
PROSITE profilePS5121310.441183203IPR005539ELK domain
PROSITE profilePS5007112.455203266IPR001356Homeobox domain
SMARTSM003891.4E-13205270IPR001356Homeobox domain
SuperFamilySSF466891.37E-19205275IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-27208268IPR009057Homeodomain-like
CDDcd000861.75E-12215267No hitNo description
PfamPF059203.2E-16223262IPR008422Homeobox KN domain
PROSITE patternPS000270241264IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEDLYSIHPG ISRAGAAASE ASGVAGSPPP AAPPPPPPPA DLTELVKAQI AGHPRYPTLL  60
SAYIECRKVG APPEVAALLE EIGRERRAAA SAAGEVGLDP ELDEFMDAYC RVLERYKEEL  120
SRPLDEAASF LSSVRLQLGS LCGAAASSLS DEMVGSSEDE PCSGDTDATD LGQEHSSRLA  180
ERELKEMLLK KYSGSLSRLR SEFLKKRKKG KLPKDARSAL MDWWNTHYRW PYPTEDDKVR  240
LATMTGLDPK QINNWFINQR KRHWKPSEDM RFALMEGVTG GIGSSSGTTL YFDTGTIGP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198207LRSEFLKKRK
2204208KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15425A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4571180.0AF457118.1 Zea mays knotted1-like homeodomain protein liguleless4a (lg4a) mRNA, complete cds.
GenBankBT0852520.0BT085252.1 Zea mays full-length cDNA clone ZM_BFb0343E20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105084.11e-169liguleless 4
SwissprotQ9FP291e-147KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A0A9BTH01e-174A0A0A9BTH0_ARUDO; Uncharacterized protein
STRINGGRMZM2G094241_P011e-168(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-67KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]