PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15413A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 596aa    MW: 62906.1 Da    PI: 8.2921
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15413AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.64.9e-09260281526
                                --SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                +C+ f+++G C+ Gd+C +aHg
  Oropetium_20150105_15413A 260 PCPEFRKGGSCRKGDNCEYAHG 281
                                8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.209.8E-872152IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.83273143IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.64E-675145IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.194108143IPR002110Ankyrin repeat
SMARTSM003565.9E-6255282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-5255285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.648255283IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-6260281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5260283IPR000571Zinc finger, CCCH-type
SMARTSM0035689291314IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643291315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MCSGPRKPST PPPVAATAKD SASASLLLEL AAADDLVAFR RAVEDDKAAA LDAACHWYGP  60
SAAAAATGRP RIELRSPAMV AALYGSTTVL AYVLSVAPSE AARASGSDGA TPLHLAAAGG  120
SANAVAATHL LLAAGASADA LAFSGLRAGD LLPRAAVAAE KDRSLRVLLK SPAVSPSSSP  180
KKSASPPPPA PEQRKEYPPD LTLPDLKSGL FSTDEFRMYS FKVKPCSRAY SHDWTECPFV  240
HPGENARRRD PRRYSYSCVP CPEFRKGGSC RKGDNCEYAH GVFECWLHPA QYRTRLCKDE  300
VGCARRICFF AHKPEELRAV NPSAVSVGMQ PAVSSPRSSP PNGLDMGMLN PAWPSSPASR  360
LKTALSGREL DFDLELLALD QYQQKLFDKV SSPRAASWGS AGGIGSPIPA ATPPRSVPDY  420
TDLLGSVDPA MLSQLHALSL KQAGDMPAYG SLTDSQLHMP TSPMVGASTA FGMDHSMAKA  480
IMSSRASAFS KRSQSFIDRG GRAPAARSLM SPAPSNSPSM LSDWGSPDGR LDWGVQGDEL  540
NKFRKSASFA FRGQSAAAPV ATPAEPDVSW VNSLVRDGHA GDIFAQWPEQ EQMVA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15413A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807185.10.0zinc finger CCCH domain-containing protein 33-like
SwissprotQ688R30.0C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A3L6RCM20.0A0A3L6RCM2_PANMI; Zinc finger CCCH domain-containing protein 33
STRINGSb09g002390.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-120C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]