 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Oropetium_20150105_15017A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
NAC |
| Protein Properties |
Length: 259aa MW: 28854.5 Da PI: 7.6637 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_15017A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 135.4 | 3.8e-42 | 16 | 147 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvka.eekewyfFskrdkkyatgkrknratks 80
ppGfrF Pt+eel+ +yL+++++g++ ++e+ i+ vd+y+++P+dL+ + + + ++++w+fF++r++++ +g r+ r+t s
Oropetium_20150105_15017A 16 PPGFRFYPTEEELLGFYLRHRLAGTRPDVERLIPVVDLYSYHPRDLQpMagaA-NVsDREQWFFFCPRAERELHGGRPARTTPS 98
9****************************999**************7544532.2225569*********************** PP
NAM 81 gyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
gyWkatg+ v+s+ +++++g k+t+vfy+grap+g+kt+W m+ey++
Oropetium_20150105_15017A 99 GYWKATGSPSWVISStSSRVIGEKRTMVFYQGRAPTGTKTRWKMNEYKA 147
********999998868889***************************85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 259 aa
Download sequence Send
to blast |
MNTTTTTIIS AEPVIPPGFR FYPTEEELLG FYLRHRLAGT RPDVERLIPV VDLYSYHPRD 60
LQPMAGAANV SDREQWFFFC PRAERELHGG RPARTTPSGY WKATGSPSWV ISSTSSRVIG 120
EKRTMVFYQG RAPTGTKTRW KMNEYKAVAE PEVPVALVPL RDIQLRNEFS VCRVYISTGT 180
LRSFDRRPLN HANASHDQAA TTAQNSHDSS SSGLRGTTMV IDPDGIDWNS LTMMIPLIAD 240
DDGLSFSGTD GLARTMWP*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-30 | 15 | 175 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-30 | 15 | 175 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-30 | 15 | 175 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-30 | 15 | 175 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-30 | 15 | 175 | 20 | 166 | NAC domain-containing protein 19 |
| 3swm_B | 1e-30 | 15 | 175 | 20 | 166 | NAC domain-containing protein 19 |
| 3swm_C | 1e-30 | 15 | 175 | 20 | 166 | NAC domain-containing protein 19 |
| 3swm_D | 1e-30 | 15 | 175 | 20 | 166 | NAC domain-containing protein 19 |
| 3swp_A | 1e-30 | 15 | 175 | 20 | 166 | NAC domain-containing protein 19 |
| 3swp_B | 1e-30 | 15 | 175 | 20 | 166 | NAC domain-containing protein 19 |
| 3swp_C | 1e-30 | 15 | 175 | 20 | 166 | NAC domain-containing protein 19 |
| 3swp_D | 1e-30 | 15 | 175 | 20 | 166 | NAC domain-containing protein 19 |
| 4dul_A | 1e-30 | 15 | 175 | 17 | 163 | NAC domain-containing protein 19 |
| 4dul_B | 1e-30 | 15 | 175 | 17 | 163 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012619 | 1e-118 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
