 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Oropetium_20150105_14971A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
Trihelix |
| Protein Properties |
Length: 278aa MW: 32143.3 Da PI: 7.2038 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_14971A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 62.4 | 1e-19 | 2 | 63 | 26 | 86 |
trihelix 26 lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86
+kk++W+++s++m +rg+++sp+qC++k+++lnkryk+++++ +++ +++++ + +++d+++
Oropetium_20150105_14971A 2 QKKGKWKAISNVMGQRGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVANPALLDSMN 63
89********************************************5599999999999997 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 278 aa
Download sequence Send
to blast |
MQKKGKWKAI SNVMGQRGCH VSPQQCEDKF NDLNKRYKRL TDILGRGTAC NVVANPALLD 60
SMNHLSDKMK DDAKKILSSK HLFYEEMCSY HNNNRANLPE DPALQHSLQL ALRCKEDHDS 120
RRDLSGDADE DDQSADSDYY EDDEEHHAVH MNMRVPTVPK RMQHSDMALV NSSPHEGSVR 180
YDSHGITVDI NKVCPDGTNL SSQSLEIQKR RLEIDAKELE LTKQRLKWER FKKKKDRELE 240
RMTLENEHMM IENKRLELEL RQKELQLGLK LKGQGHV*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 228 | 234 | ERFKKKK |
| 2 | 229 | 235 | RFKKKKD |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT1G21200.1 | 2e-72 | sequence-specific DNA binding transcription factors |
