 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Oropetium_20150105_14915A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
TCP |
| Protein Properties |
Length: 391aa MW: 41663.4 Da PI: 9.1159 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_14915A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 138.9 | 4.2e-43 | 94 | 252 | 4 | 134 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86
k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+eWLlqqa+pai ++tgt++++a+++ a+s +s +++++
Oropetium_20150105_14915A 94 XKRPTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETVEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSGHHHHH 177
699****************************************************************99977777777777666 PP
TCP 87 sg....kaaksaa.kskksqksaasalnlakesr......................akarararertrekmrikn 134
s+ +aa++++ ++ ++q++ a++l +++++ a + +r+r+r++++ ++++
Oropetium_20150105_14915A 178 SAaasrAAAAFHHlQQPPQQHDVAAMLGWNQQHQlxxxxxxxxxxxxxxxlqqdpgAGEFMRKRYREADDLFKDT 252
6688886677777699999*********99999999999999999999999999999999999999998888775 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 391 aa
Download sequence Send
to blast |
MDHGAAPSSS TSTSTNSSRS AXXXXXXXXX HPFYYAAVQG AAAAAGMAPF MGSLSIVPGA 60
VAEPQPVAPA APAVASSGGA DKKQXXXXXX XXXXKRPTKD RHTKVDGRGR RIRMPALCAA 120
RVFQLTRELG HKTDGETVEW LLQQAEPAIV AATGTGTIPA NFSSLAVSLR SGHHHHHSAA 180
ASRAAAAFHH LQQPPQQHDV AAMLGWNQQH QLXXXXXXXX XXXXXXXLQQ DPGAGEFMRK 240
RYREADDLFK DTTAARQQQQ QHPDAEPEEE QKARALPTAM WAPNSSAAAG GGAAFWMQPA 300
WATFGGGGGG GTVQAPLQFM STRSGFHGAM ADSSIGMLAA LNNTTAAAGG NVQHQQHEEH 360
QQQPETMTRR XXXXXXXXXX XXXXGAASPQ *
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
