PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

MYB

Protein Properties

Length: 289aa MW: 31850 Da PI: 8.5681

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_14889A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.8	2.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++k +G g+W++ ++ g+ R++k+c++rw +yl Oropetium_20150105_14889A 14 KGAWTKEEDQRLIAYIKTHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	58.3	1.7e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++ ++++G++ W++Ia +++ gRt++++k++w+++ Oropetium_20150105_14889A 67 RGNFTEEEDELIIKFHELFGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.112	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	6.11E-30	13	108	IPR009057	Homeodomain-like
SMART	SM00717	4.6E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-15	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-24	15	68	IPR009057	Homeodomain-like
CDD	cd00167	4.73E-12	16	61	No hit	No description
PROSITE profile	PS51294	28.684	62	116	IPR017930	Myb domain
SMART	SM00717	4.0E-18	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	7.9E-17	67	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-28	69	116	IPR009057	Homeodomain-like
CDD	cd00167	1.59E-14	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MGRSPCCEQA HTNKGAWTKE EDQRLIAYIK THGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIK FHELFGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLARG 120 IDPQTHRPVN AVAAAAPAQQ PQQHFQLPAQ QTHFAASPGQ PQLQQDHFAG VLSHSPEGAC 180 SHSSDDERRS ATPPPPTRPR HLDIDLNLSI SLAPYQPPEE SGDKPLKQVL PAMSTTTTAG 240 NINATPVCLC LNSLGYRPGI DCVCSGGASS RQQEQSFTSS ALLQRPLV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-29	14	116	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_14889A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054758	1e-159	BT054758.1 Zea mays full-length cDNA clone ZM_BFb0028G03 mRNA, complete cds.
GenBank	KJ726796	1e-159	KJ726796.1 Zea mays clone pUT2285 MYB transcription factor (MYB64) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826560.1	1e-142	myb-related protein 308-like
Swissprot	P81393	3e-89	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A2S3ICU8	1e-141	A0A2S3ICU8_9POAL; Uncharacterized protein
STRING	Pavir.Ha00871.1.p	1e-138	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	6e-88	myb domain protein 4

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_14889A

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]