PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14801A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family SBP
Protein Properties Length: 587aa    MW: 65514.4 Da    PI: 6.3887
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14801AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP47.45.3e-1513434878
                               SEEETTT--SS--S-STTTT-------S--- CS
                        SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78
                               rfh l efDe+krsCrrrLa+hn+rrrk+q+
  Oropetium_20150105_14801A 13 RFHPLAEFDEGKRSCRRRLAGHNRRRRKTQP 43
                               9***************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114114.246141IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.47E-111244IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.102.2E-41228IPR004333Transcription factor, SBP-box
PfamPF031105.7E-81340IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.202.5E-4447551IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.13E-5448554IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MELLITYSGH SFRFHPLAEF DEGKRSCRRR LAGHNRRRRK TQPTDVASQL LLPGNQENAA  60
NRTQDIVNLI TVIARLQGTN NTGKVPSIPP IPDKQNLVEI ISKINSLNNT SSATESPPSE  120
MDTTNKYLSS ESSNPLDERS PPSSPPITHK FFPIHSVDEE VRHPQAADYG EDAAMVEVST  180
SRAWGAPPLE LFKDSELPIE NGSPPNPGII FKLFGKEPST IPGNLRSEII KWLKHSPTEM  240
EGYIRPGCLV LSMYLSMPPI AWDELEENLL QRVNTLVQSS DADFWREGRF LVRTDTQLVS  300
YKDGMTRLSK SWRNWNTPEL TIVSPIAVVG GKKTSLILKG RNLTVPGTQY TILITCELVI  360
DAGSTVENRF RGNSFPRAAA CTPSTRSDVC DSDLIRFSTI RFKHLLLFSS ERDWCSLTRT  420
LLDLLAKRSL VNEELSQETI EMLSEIHLLN RAVKRKSSRM VHLLVQFVVT LPDSSKLYPF  480
VPNLPGPGGL TPLHLAASME NAEDIVDALT DDPQQVGLSC WQSVLDDDGQ SPETYAKLRN  540
HKSYNELVAQ KLVNKKNNQV TIMVGKDEIL VDQFGNDGDY DCSRVL*
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14801A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320166.10.0squamosa promoter-binding-like protein 15
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLA0A1B6PIZ00.0A0A1B6PIZ0_SORBI; Uncharacterized protein
STRINGPavir.Fb01917.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54563853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.11e-116squamosa promoter binding protein-like 14