PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14650A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 303aa    MW: 32276.3 Da    PI: 6.7109
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14650AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-09139186455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  Oropetium_20150105_14650A 139 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 186
                                8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-17133203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-11133190No hitNo description
PROSITE profilePS5088815.542135185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-16135199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6139186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10141191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAEFSSHHSL LLKMPAPLTT GHTAVSLPGL LFYSQSHGGQ APPASANAAS GGEAAMAEES  60
SSAVVDICPQ GSASPLDRKR KVTEDNSTLS CGHSKDCKEG KSKRGKRSSK GAEEKCTTDD  120
EAPKDYIHVR ARRGQATDSH SLAERVRRER ISERMRMLQA LVPGCDKVTG KALILDEIIN  180
YVQSLQNQVE FLSMRIASMS PVMYGFGMDS SDGLHDQAQK MGAMFQEALA MPGPAVSNAS  240
ASAAPSQAMT DTTTSTAAYS LLQGQGTISF SQDSSSYLMQ AVGEPKQELL NQLVFNNMCS  300
FQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14650A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821629.11e-154transcription factor bHLH137-like isoform X1
TrEMBLA0A0A9NQF61e-158A0A0A9NQF6_ARUDO; Uncharacterized protein
STRINGPavir.Fa00144.1.p1e-155(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-40bHLH family protein