PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14459A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 432aa    MW: 46670.4 Da    PI: 8.2817
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14459AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.89.9e-07248270123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                + C+ Cgk F+r  nL+ H+r H
  Oropetium_20150105_14459A 248 HYCQLCGKGFKRDANLRMHMRAH 270
                                68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.79E-6246273No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5248272IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0055248270IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.674248275IPR007087Zinc finger, C2H2
PROSITE patternPS000280250270IPR007087Zinc finger, C2H2
SMARTSM00355140306339IPR015880Zinc finger, C2H2-like
SMARTSM0035547344370IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MMSSGMIPSV PPGGVGGGGD GPSRNPPPYF LHSHQQEEEL VFHAMDGGDA SSNGMGGCYM  60
QPAAAVVSDS DAHCHALLYN LSVLRDKVQQ LQPLVGLAVA HDGPVAAAAS GASAVIQEII  120
STASSMMYAF QHICHTATTA VGRQQQHYSG AAASTSTLGH ATENNNNTSQ VTSACGDQQQ  180
AVALIDDDHI RITDVTTTMH QQHWQHQKVG KTTAASTXXX XXXXXXXXXX AAAIIELDAA  240
ELLAKYTHYC QLCGKGFKRD ANLRMHMRAH GDEYKSSAAL ANPANKAAAN SAGAGGGDVV  300
RRRSYYSCPQ EGCRWNRKHA KFQPLKSVIC AKNHYKRSHC PKMYVCNRCN LKHFSVLSDL  360
RTHEKHCGDH RWLXXXXXXX XXXXXXXXXX XXXXXXHPAV PLHNNNNGKI PRSSSSTTSS  420
AQHMDGHQAA M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14459A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0632901e-101AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence.
GenBankAP0045871e-101AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBankAP0055441e-101AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01.
GenBankAP0149641e-101AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-101CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683035.11e-122protein SENSITIVE TO PROTON RHIZOTOXICITY 2
RefseqXP_025822509.11e-122LOW QUALITY PROTEIN: protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
TrEMBLA0A1E5WL881e-127A0A1E5WL88_9POAL; Zinc finger protein STOP1-like protein
STRINGSi013894m1e-122(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.19e-61C2H2 family protein