 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Oropetium_20150105_14357A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 244aa MW: 26783.1 Da PI: 10.2654 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_14357A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.1 | 1.4e-18 | 122 | 176 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++t+ q + Le+ F+ ++ +s++++ eLA+++gL+ rqV vWFqNrRa+ k
Oropetium_20150105_14357A 122 RKKLRLTSAQATMLEDTFRAHSILSHAQKHELARRIGLSARQVEVWFQNRRARTK 176
788899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 113 | 2e-36 | 122 | 210 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84
+kk+rl++ q+++LE++F++++ L++ +K+elar++gl++rqv+vWFqnrRARtk+kq+E+d+e L+r++d+l++en+rL+++
Oropetium_20150105_14357A 122 RKKLRLTSAQATMLEDTFRAHSILSHAQKHELARRIGLSARQVEVWFQNRRARTKLKQTEVDCELLRRWCDRLTDENARLRRDL 205
69********************************************************************************** PP
HD-ZIP_I/II 85 eeLre 89
+e+r+
Oropetium_20150105_14357A 206 AEIRA 210
99986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 244 aa
Download sequence Send
to blast |
MSSLTTAGSS MEDEEFFDTR LSLEIGETSR PQRQTTTTTT VRLFGELISP QDRAELRLPT 60
PAGRNKKRAE SGAAIATRGG GRHNKKAKTT SQADQNDDGD HRRSPSDDGD LRIPSVDGGS 120
SRKKLRLTSA QATMLEDTFR AHSILSHAQK HELARRIGLS ARQVEVWFQN RRARTKLKQT 180
EVDCELLRRW CDRLTDENAR LRRDLAEIRA AAGTNKLPAA VSAVCPSCCD KKAMAIVVAG 240
DVA*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 120 | 126 | SRKKLRL |
| 2 | 170 | 178 | RRARTKLKQ |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC079890 | 2e-31 | AC079890.13 Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete sequence. |
| GenBank | AF211193 | 2e-31 | AF211193.1 Oryza sativa homeodomain-leucine zipper transcription factor (Hox1) gene, complete cds. |
| GenBank | AK065404 | 2e-31 | AK065404.1 Oryza sativa Japonica Group cDNA clone:J013006I17, full insert sequence. |
| GenBank | AP014966 | 2e-31 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012618 | 2e-31 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
| GenBank | CT832944 | 2e-31 | CT832944.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107F07, full insert sequence. |
| GenBank | CT832945 | 2e-31 | CT832945.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120M16, full insert sequence. |
| GenBank | X96681 | 2e-31 | X96681.2 Oryza sativa mRNA for DNA-binding protein (Oshox1 gene). |
