PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14303A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Nin-like
Protein Properties Length: 748aa    MW: 80920.7 Da    PI: 5.7135
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14303AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK85.16.2e-27507556251
                     RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                                ek++sle+l++yFs+++kdAA++Lgvc+T++KriCRq+GI+RWP+R+i++
  Oropetium_20150105_14303A 507 EKSVSLEELQRYFSGKMKDAARSLGVCPTTMKRICRQHGISRWPFRQIAK 556
                                799*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.291493577IPR003035RWP-RK domain
PfamPF020422.6E-24510556IPR003035RWP-RK domain
SuperFamilySSF542777.85E-19635708No hitNo description
PROSITE profilePS5174517.597642735IPR000270PB1 domain
SMARTSM006664.6E-18642735IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2406.8E-22643709No hitNo description
PfamPF005643.5E-13643710IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MVMGMEADMD RVPERFDLLL DQDGARETNK CGTTGSDVSR SGAGSGGSAS AAAKDFADGY  60
AVKERIARAL RIYKEAAAAE DDGDGVLVQV WAPARDGARR VLATRGQPFV LAPPQCRRLF  120
QYRTVSLTHA FPVDGAVPGE RGMPGRVFDA GTPECTPNVQ YYGSGEYARI SYALIYDIQA  180
ALALPVLDPD TGACLAVLEL VMTSPRLRFA AEVDKICKAL QEVALRGSDI RCCPVTEVCN  240
DDEAVELPMS EVSAILTTVC EAHKLPLAQA WVRCKRCNDP GTERASLTAA GAPFHLAADD  300
EGVRGFREAC TEQHLREGRG GLVEQVARAR EPRFCSDVTK YSMDAYPLAH HARFSGLAGC  360
LAVCVELRCE SGREEECVLE FFLPPDCRDG XXXXXXXXXX XXTIRERFGN GELKAVTICG  420
LQDFDFEMAA GAEGGVLLPD RTIVADAPEL WLVDHGGYER DSDEDDVHLA AAVCGADVEA  480
MKLNSGEQKE GNDLTSRVRR RRKRKNEKSV SLEELQRYFS GKMKDAARSL GVCPTTMKRI  540
CRQHGISRWP FRQIAKANNS IDKVKRIFES VQYSPVPIVA PAPAASQHAP ATATAHHRPT  600
ALPCLSSALG VASSQGSCCQ EPIPRKRTTM RKPFHAGSND GLVTIKASYR GDIIRFRVPS  660
SAGVETVKRE VAKRLGLEID AFDVKYLDDD NEWVLLSCDA DFQECLGVIP ALSAALSSSG  720
SGAAQPVVRM IVQEVADSHG SSCGSSE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1496503RVRRRRKR
2498504RRRRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14303A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681074.10.0protein NLP3
TrEMBLA0A3L6QJT00.0A0A3L6QJT0_PANMI; Uncharacterized protein
STRINGSi016430m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62692939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.11e-115Nin-like family protein