PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_14187A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 535aa MW: 57802.6 Da PI: 4.5155 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.5 | 1e-12 | 285 | 328 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ +Lr+l+P+ +K++ a+iL A++YI Lq Oropetium_20150105_14187A 285 VAERKRRKKLNDRLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 328 58*********************7.....7***************9887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.34E-14 | 278 | 332 | No hit | No description |
SuperFamily | SSF47459 | 8.9E-18 | 278 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.84 | 278 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.8E-16 | 284 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-16 | 285 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-10 | 285 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048657 | Biological Process | anther wall tapetum cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 535 aa Download sequence Send to blast |
MGGEGGDHHQ FMAAVGSNNV EAALRPLVGA DAWDYCIYWR LSPDQRFLEM AGFCCGGEFE 60 AQVSALGDLP LSISLDSSSA GMHAEAMVSN QPIWQTSCAT ELLPVKYSGV SMAEEEQMAE 120 LVMAQCGVVV ESAPPPPPPG VVVGNDEAWG EPPAGFAWYG AADPQRLYVP SLNLFDAAAD 180 PFLSAVQPQQ GSSTVVDDGA WHYAAAAAGS DEPSSAAAAV QQPAEQQQLH VGLGPRGGAD 240 SGSEGSDMQG DPEXXXXXXX XXXXXXXXXX KGGGGGKRQQ CKNLVAERKR RKKLNDRLYK 300 LRSLVPNITK MDRASILGDA IDYIVGLQNQ VKALQDELED PTADVLLDHP PASLVGLELE 360 NDDSPPPRAS RKRSRRDRXX XXXXXXXXKG HDMEPQVEVR QVEANEFFLQ VLCERKPGRF 420 VQLMDAINAL GLEVTNVNVT SYKPLVLNVF RVVRRDNEVA VQADRVRDSL LEVTRESYGA 480 GVWSSSAALP VGGTSGVNVK QAADAVDVKX XXXXXXXXXE DHYAGYNHLL QYLA* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 286 | 293 | ERKRRKKL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_14187A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT034326 | 1e-68 | BT034326.1 Zea mays full-length cDNA clone ZM_BFc0007A07 mRNA, complete cds. | |||
GenBank | BT063118 | 1e-68 | BT063118.1 Zea mays full-length cDNA clone ZM_BFc0027J15 mRNA, complete cds. | |||
GenBank | BT065717 | 1e-68 | BT065717.1 Zea mays full-length cDNA clone ZM_BFc0042K04 mRNA, complete cds. | |||
GenBank | EU964482 | 1e-68 | EU964482.1 Zea mays clone 279205 hypothetical protein mRNA, complete cds. | |||
GenBank | EU972961 | 1e-68 | EU972961.1 Zea mays clone 390787 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825508.1 | 0.0 | transcription factor TDR-like | ||||
Refseq | XP_025825517.1 | 0.0 | transcription factor TDR-like | ||||
Refseq | XP_025825524.1 | 0.0 | transcription factor TDR-like | ||||
Refseq | XP_025825535.1 | 0.0 | transcription factor TDR-like | ||||
Refseq | XP_025825544.1 | 0.0 | transcription factor TDR-like | ||||
Refseq | XP_025825551.1 | 0.0 | transcription factor TDR-like | ||||
Refseq | XP_025825560.1 | 0.0 | transcription factor TDR-like | ||||
Swissprot | Q6YUS3 | 1e-150 | TDR_ORYSJ; Transcription factor TDR | ||||
TrEMBL | A0A3L6QCU4 | 0.0 | A0A3L6QCU4_PANMI; Transcription factor ABORTED MICROSPORES-like isoform X2 | ||||
STRING | Pavir.Ab00204.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5530 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16910.1 | 2e-52 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_14187A |