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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_14157A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bHLH | ||||||||
Protein Properties | Length: 161aa MW: 17865.5 Da PI: 10.1616 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.7 | 4.9e-09 | 2 | 41 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 RRd++N++f eL +++ + ++ Kl+Ka iL A + +++L Oropetium_20150105_14157A 2 RRDKLNDRFIELNSVINPG---KQAKLDKANILSDAARMVSQL 41 ******************9...9*****************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.652 | 1 | 41 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-6 | 2 | 41 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-10 | 2 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-12 | 2 | 51 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.06E-6 | 2 | 46 | No hit | No description |
Gene3D | G3DSA:1.20.5.340 | 0.001 | 52 | 88 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MRRDKLNDRF IELNSVINPG KQAKLDKANI LSDAARMVSQ LRGEAEKLKE SNDKLRETIK 60 DLKAEKNELR DEKVSLKAEK ERLEQQVKAM SVAPTGVVPH LPHPTALHPA AFTPFAPQHH 120 GPANKNASVP TAFPGMAMWQ WLPPTVVDTT QDPKLWPPNA * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_14157A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021314882.1 | 1e-96 | transcription factor ILR3-like isoform X1 | ||||
Refseq | XP_021314883.1 | 1e-96 | transcription factor ILR3-like isoform X2 | ||||
Swissprot | Q9FH37 | 3e-48 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A0A9LI90 | 5e-97 | A0A0A9LI90_ARUDO; Uncharacterized protein | ||||
STRING | Sb04g001200.1 | 5e-96 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8173 | 36 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 9e-47 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_14157A |