PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

MYB

Protein Properties

Length: 221aa MW: 25238.7 Da PI: 10.0705

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_14143A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.8	1.8e-16	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l d++ ++G g+W++++++ g+ R +k+c++rw +yl Oropetium_20150105_14143A 15 KGLWSPEEDQRLRDYILKHGLGCWSAVPAKAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP
2	Myb_DNA-binding	53.6	5.3e-17	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE+++ +++ ++lG++ W+ Ia +++ gRt++++k++w++yl Oropetium_20150105_14143A 68 RGMFSQEEEDIVINLQAKLGNK-WSQIAMHLP-GRTDNEVKNYWNSYL 113 788*****************.*****.***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.46	10	62	IPR017930	Myb domain
SuperFamily	SSF46689	2.49E-29	12	109	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-11	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-14	15	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-22	16	69	IPR009057	Homeodomain-like
CDD	cd00167	2.82E-10	18	62	No hit	No description
PROSITE profile	PS51294	25.69	63	117	IPR017930	Myb domain
SMART	SM00717	2.2E-15	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	2.8E-15	68	113	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-25	70	117	IPR009057	Homeodomain-like
CDD	cd00167	2.50E-12	71	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MGCRSCEKPK MNYRKGLWSP EEDQRLRDYI LKHGLGCWSA VPAKAGLQRN GKSCRLRWIN 60 YLRPGLKRGM FSQEEEDIVI NLQAKLGNKW SQIAMHLPGR TDNEVKNYWN SYLKKRVMQA 120 QGSNPKSPPE LTXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXSAPAPV VLQPFDHQVT 180 QQQQQPKNFV FSDWAPAPES YSVSAHWPAS TASSGNVTPS H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	7e-26	9	117	23	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269\|PubMed:11581165, ECO:0000269\|PubMed:19482971}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_14143A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK368664	1e-122	AK368664.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2077L03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802030.1	1e-123	transcription factor MYB10-like
Swissprot	Q8LPH6	1e-52	MYB86_ARATH; Transcription factor MYB86
Swissprot	Q9M0K4	4e-53	LAF1_ARATH; Transcription factor LAF1
TrEMBL	A0A2S3GKS6	1e-122	A0A2S3GKS6_9POAL; Uncharacterized protein
TrEMBL	A0A2T7F0V6	1e-122	A0A2T7F0V6_9POAL; Uncharacterized protein
STRING	Pavir.Aa03518.1.p	1e-120	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12296	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52260.1	1e-55	myb domain protein 19

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_14143A

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]