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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Oropetium_20150105_13728A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
NAC |
| Protein Properties |
Length: 369aa MW: 40539.5 Da PI: 9.6029 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_13728A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 157 | 8e-49 | 29 | 154 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85
+pGfrFhPt+eel+++yL+++vegk++++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWka
Oropetium_20150105_13728A 29 MPGFRFHPTEEELIDFYLRRRVEGKRFNI-ELINLVDLYRYDPWDLPSLASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKA 111
79***************************.89***************878889******************************* PP
NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
tg d+ v +++++ +glkktLvfy g+apkg +++W+m+eyrl
Oropetium_20150105_13728A 112 TGADRMVRVEGNRSIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 154
*****************************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 369 aa
Download sequence Send
to blast |
MGGGDNNNHH PDMARGGGDD GPPAHDMVMP GFRFHPTEEE LIDFYLRRRV EGKRFNIELI 60
NLVDLYRYDP WDLPSLASIG DKEWFFYVPR DRKYRNGDRP NRVTPSGYWK ATGADRMVRV 120
EGNRSIGLKK TLVFYVGKAP KGLRSSWIMN EYRLPHGEAD RYQKEISLCR VYKRPGIEDN 180
FHLTGATARS SGSKQAATTM DKKHRTAASS RIAPVFDGGH SSGLTNKPYN GANNNGLTPS 240
SGSGAPAATM ALHTSMFRST AGSVVSLSST TSTEEDGISL YHLKGGANPM LPSSTHALLN 300
TNSTTMATIP IDELSRAIGS YQQGNNPNQP PLPSSSQHGP LVVPFPSMEK IWDWNPLLES 360
PKVCTNFK*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 5e-53 | 30 | 174 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-53 | 30 | 174 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-53 | 30 | 174 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-53 | 30 | 174 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 5e-53 | 30 | 174 | 19 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 5e-53 | 30 | 174 | 19 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
