PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

M-type_MADS

Protein Properties

Length: 157aa MW: 17289.8 Da PI: 7.0287

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_13717A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	79.3	2.7e-25	10	56	2	48
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 rien+ rqvtf+kRr+g+lKKA ELSvLCda + +iifs +gkly+ Oropetium_20150105_13717A 10 RIENTVHRQVTFCKRRAGLLKKARELSVLCDAHIGIIIFSAHGKLYD 56 8********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	2.22E-27	1	76	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.2E-35	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.478	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.58E-41	2	79	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-23	10	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MARGKVQLRR IENTVHRQVT FCKRRAGLLK KARELSVLCD AHIGIIIFSA HGKLYDLATT 60 GTMEELIERY KTASGEAQQG DGCGGDHRME DMLKAANEIL QEKIVQQNGL LDVGMMVGDQ 120 QNGHFSTVPL IEEITNPLTI LSGYSTCRSS EMGYSF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-16	1	70	1	69	MEF2C
5f28_B	2e-16	1	70	1	69	MEF2C
5f28_C	2e-16	1	70	1	69	MEF2C
5f28_D	2e-16	1	70	1	69	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_13717A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB003326	2e-79	AB003326.1 Oryza sativa Japonica Group mRNA for MADS box-like protein, complete cds, clone:R3786.
GenBank	AK069122	2e-79	AK069122.1 Oryza sativa Japonica Group cDNA clone:J023004P21, full insert sequence.
GenBank	AY551925	2e-79	AY551925.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS220 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029121861.1	6e-55	MADS-box transcription factor 26
Swissprot	A2YQK9	1e-48	MAD26_ORYSI; MADS-box transcription factor 26
Swissprot	Q0J8G8	1e-48	MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBL	R7W585	5e-82	R7W585_AEGTA; MADS-box transcription factor 26
STRING	EMT15193	8e-83	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1491	36	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71692.1	6e-37	AGAMOUS-like 12

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_13717A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Lee S, et al. Further characterization of a rice AGL12 group MADS-box gene, OsMADS26. Plant Physiol., 2008. 147(1): p. 156-68 [PMID:18354041] Khong GN, et al. OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice. Plant Physiol., 2015. 169(4): p. 2935-49 [PMID:26424158]