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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_13372A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | CAMTA | ||||||||
Protein Properties | Length: 213aa MW: 24850.5 Da PI: 9.3237 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 151.6 | 1.8e-47 | 110 | 212 | 3 | 104 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyY 85 +e +rw +++ei+aiL+n++k+++ ++ ++p sg+++Ly+rk+vr+frkDG++wkkkkdgktv+E+hekLK+g+ e +++yY Oropetium_20150105_13372A 110 SEaASRWFRPNEIYAILANHTKFQVIPQPIDKPVSGTVVLYDRKVVRNFRKDGHNWKKKKDGKTVQEAHEKLKIGNEEKVHVYY 193 45599******************************************************************************* PP CG-1 86 ahseenptfqrrcywlLee 104 a++e++p+f rrcywlL++ Oropetium_20150105_13372A 194 ARGEDDPNFFRRCYWLLDK 212 *****************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03981 | 5.1E-20 | 1 | 98 | IPR021150 | Ubiquinol-cytochrome c chaperone/UPF0174 |
PROSITE profile | PS51437 | 65.867 | 105 | 212 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.7E-49 | 108 | 212 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 2.1E-39 | 112 | 212 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MWLVLRRLKE EGKDGVKFGQ YIYEMYNHDV ELRVSKAGVN LLLTKWMKEL EKIFYGNIVK 60 YDAAISPEAR QDELVNVIWR NIYAEEGTEA IDAAATPAVQ ANLNFEKLLS EAASRWFRPN 120 EIYAILANHT KFQVIPQPID KPVSGTVVLY DRKVVRNFRK DGHNWKKKKD GKTVQEAHEK 180 LKIGNEEKVH VYYARGEDDP NFFRRCYWLL DK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_13372A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065561 | 1e-111 | BT065561.1 Zea mays full-length cDNA clone ZM_BFb0287G06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957727.1 | 2e-65 | calmodulin-binding transcription activator 6 | ||||
Swissprot | Q7XHR2 | 1e-65 | CBT_ORYSJ; Calmodulin-binding transcription activator CBT | ||||
TrEMBL | A0A453BHH9 | 4e-69 | A0A453BHH9_AEGTS; Uncharacterized protein | ||||
STRING | Pavir.J11066.1.p | 1e-68 | (Panicum virgatum) | ||||
STRING | Si028862m | 6e-65 | (Setaria italica) | ||||
STRING | Traes_2BS_1A9DB766A.1 | 4e-69 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16940.1 | 4e-48 | calmodulin binding;transcription regulators |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_13372A |