PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13166A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family M-type_MADS
Protein Properties Length: 443aa    MW: 46345.8 Da    PI: 4.8
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13166AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.59.6e-10921201442
                                HHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                     SRF-TF  14 skRrngilKKAeELSvLCdaevaviifss 42 
                                 kR +++ KKA EL +LC++++avi ++ 
  Oropetium_20150105_13166A  92 GKRVKTLTKKARELATLCNIDIAVICAAR 120
                                69***********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554559.81E-1092161IPR002100Transcription factor, MADS-box
PfamPF003194.8E-893118IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MGLSLPTIPD ESSAAGTHRA RNAACPNAGI RAANSGAIGA AAAAAARPSA ASIPHAPPQV  60
RGLGDREVGG LGDKEGEGEM PRAMDAISAR LGKRVKTLTK KARELATLCN IDIAVICAAR  120
ASLSLMWPSK QAALATVSRF NALPLEERAS LKEDHADHFA RRLAEERQKL VRAQEGGVAG  180
ALGSWDGALE DMAEEQLREL LASIEGSLVA AKSRTLKPQL QSGGASDCAR RVPQGPLHAD  240
EATAETSVSV TARNASEGAR RRLGKADAGG PVSGLALEAS PTKAPNAAPL VADQVTSENS  300
ESSTVRAGGN ELHRPLFEVD ALELPLEANS RRPHNAAPPV SHGAVEGDDE SEDAQILLVK  360
GDADDAEWMR DLVEALKKIP QPSNAAPNYD ETEYLHIGGY AIELDAYDYI CFDLGMLPPY  420
IGVGPDSPGS GDDQPLKLWS WE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13166A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1587778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.14e-08AGAMOUS-like 38