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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Oropetium_20150105_13038A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
LBD |
| Protein Properties |
Length: 269aa MW: 27444.7 Da PI: 7.8629 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_13038A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 137.9 | 3.4e-43 | 38 | 136 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84
+CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq
Oropetium_20150105_13038A 38 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVNSLAYEADMRLRDPVYGCVGVISILQ 121
7*********************************************************************************** PP
DUF260 85 qqleqlkaelallke 99
++l+ql+++la++k
Oropetium_20150105_13038A 122 HNLRQLQQDLARAKY 136
**********99876 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009799 | Biological Process | specification of symmetry |
| GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis |
| GO:0009954 | Biological Process | proximal/distal pattern formation |
| GO:0048441 | Biological Process | petal development |
| GO:0005654 | Cellular Component | nucleoplasm |
| Sequence ? help Back to Top |
| Protein Sequence Length: 269 aa
Download sequence Send
to blast |
MASSSASSMP PAPSGSVITV ASSSSSAAAA AVCGTGSPCA ACKFLRRKCQ PDCVFAPYFP 60
PDNPQKFVHV HRVFGASNVT KLLNELHPFQ REDAVNSLAY EADMRLRDPV YGCVGVISIL 120
QHNLRQLQQD LARAKYELSK YQAAAAAAAS ASTGPNGQQA MAEFIGNGGG MPNGGGHNFI 180
HSSALGSIGV FGGAGQDHHF SSNAQMLSRG YDGTEPIARL GINGGYEFGY STTMGGPGGP 240
VPGLGTLGVS SFLKSGTAGG DEKPSTGQ*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}. |
