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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_12929A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
C2H2 |
| Protein Properties |
Length: 518aa MW: 56703.5 Da PI: 5.8933 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_12929A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 19.8 | 2.2e-06 | 277 | 298 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
C +Cgk F+r nL+ H+r H
Oropetium_20150105_12929A 277 FCLICGKGFKRDANLRMHMRGH 298
5*******************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010044 | Biological Process | response to aluminum ion |
| GO:0010447 | Biological Process | response to acidic pH |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 518 aa
Download sequence Send
to blast |
MEGEMIRSLE TAMKASSSMA SGTDNPDQQI APSNSVEQFY LSRPNQSFPG LPPFFGSPSS 60
SLYLPNENEP KVGNQFEQNP SVNNLIDWDP QAIVSNLSFL EQKIKQVKDI VQSMSSRENQ 120
TAGGSCELAA KQQLITADLT SIIIQLISTA GSLLPSMKNP LSSNPAVRQL SNPLGSPMGF 180
GMNANQRLST NNKTMPDVNK ASDYDELINS LNTNQDEKDE LIKCPHPCGG EGSEPTPMED 240
HDVKESDDGG EGENLPPGSY VVLQLEKEEI LAPHTHFCLI CGKGFKRDAN LRMHMRGHGD 300
EYKTPAALAK PSKDSGSDHA PVTRYSCPFM GCKRNKEHKK FQPLKTILCV KNHYKRSHCD 360
KSYTCSRCNT KKFSVIADLK THEKHCGRDK WLCSCGTTFS RKDKLFGHVA LFQGHTPALP 420
MDDVKVSEAS EQPQGSEAMN EIAKNIGYSI PCSSSDGISN LDMKVTDDAR GFFSPLNFDP 480
CFGALDDFTR PGFDISENPF SFLPSGSCSF GQQNSDS*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
