PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12765A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 267aa    MW: 28664.8 Da    PI: 8.8488
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12765AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.47.7e-29116169155
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                k+r++Wt eLH+rF+eav+qL G + A+Pk+i+++m+v+g+t+ehv+SHLQkYR+
  Oropetium_20150105_12765A 116 KQRMVWTAELHRRFIEAVAQL-GDKAAVPKAIVRVMNVEGMTREHVASHLQKYRV 169
                                79*******************.99******************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.84E-19114173IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-28115173IPR009057Homeodomain-like
PROSITE profilePS5129410.187115172IPR017930Myb domain
TIGRFAMsTIGR015572.9E-24116169IPR006447Myb domain, plants
PfamPF002491.7E-8118168IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MLSPRGDQPH DAPSPPDMGA GGVYEWEAGL PTAAELTPVS HQLIPRALAA AFRIHVAGDS  60
ASSDSPTSHL SFRXXXXXXX XXXXXXXXXX XEEETEVAGA PEDGAGRARA VQVGKKQRMV  120
WTAELHRRFI EAVAQLGDKA AVPKAIVRVM NVEGMTREHV ASHLQKYRVY LKNTRDTNAA  180
PPGHPTHGFP FGAQPSSDTS NSRGCSSSLS REGGKWLKAP GYKETDKQCS SAPLPSIQFV  240
NGIICSPLHT PRLRAMATKH GEPSAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-22116172157Transcription factor LUX
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12765A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970554.11e-55transcription factor PCL1
TrEMBLA0A368RD642e-54A0A368RD64_SETIT; Uncharacterized protein
STRINGSi002016m1e-53(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.13e-29G2-like family protein