PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12679A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 272aa    MW: 29343.6 Da    PI: 8.4789
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12679AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-09119169255
                                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                r  h  rEr RR+r+ ++f+ L  llP+     s K  K +i+  A  YI +L+
  Oropetium_20150105_12679A 119 RFRHITRERLRRERLSQGFADLHALLPPG---ASSKGGKNDIVGAAAGYIADLE 169
                                667999**********************6...69****************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.94E-14116183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.532117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-10118182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6119169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-4123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDPFFSYLQD AILADDDDDD LMTSLGGVIL PPPAPGTGSA FTAYQQQGSA SETSSSLYHP  60
RTSGGANMHR RMFGYLRRIG EDASSMTMTT NVMVEDARSV RDAATTTTQA PPTGSSTRRF  120
RHITRERLRR ERLSQGFADL HALLPPGASS KGGKNDIVGA AAGYIADLEG RKQRLRARNQ  180
DLLLLXXXXX XXXXXVARTR SGSGSGVGMV VKVRAESAAV NVFETVLRRL KAMEDMRVTG  240
IRSCFRDDGG GMWMDVGVEC EGNSKCVEGP S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12679A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701619.12e-67transcription factor BHLH148
TrEMBLK3XK975e-66K3XK97_SETIT; Uncharacterized protein
STRINGSi002320m9e-67(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127302432