 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_12661A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
LBD |
| Protein Properties |
Length: 221aa MW: 23066.3 Da PI: 7.061 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_12661A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 117.7 | 6.9e-37 | 32 | 137 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf......paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78
+C aCk+lrr+C+++Cv+ap+f +++++fa+vhk+FGasnv k+l+++p r+d++ +++yeA+ar+ dPvyG+vg
Oropetium_20150105_12661A 32 PCGACKFLRRRCVPGCVFAPHFgagsggGGASAAQFAAVHKVFGASNVAKMLSRVPAALRRDVAGTVCYEAQARIADPVYGCVG 115
7*********************55444433667*************************************************** PP
DUF260 79 vilklqqqleqlkaelallkee 100
+il+lq+q++ ++ael+++++e
Oropetium_20150105_12661A 116 TILALQHQVALVQAELSTVQTE 137
******************9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 221 aa
Download sequence Send
to blast |
MSRAIQPPGK LAGAEPAADA QPEEGPAGPG APCGACKFLR RRCVPGCVFA PHFGAGSGGG 60
GASAAQFAAV HKVFGASNVA KMLSRVPAAL RRDVAGTVCY EAQARIADPV YGCVGTILAL 120
QHQVALVQAE LSTVQTELLN RRLALATVLP SLHAASSPTS QMVNNCGALP PQTVDYIDID 180
PSLRGLPHPL LPSQHERRLE EEEGRSQIMV ESWENRNSCD *
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT086412 | 1e-108 | BT086412.1 Zea mays full-length cDNA clone ZM_BFc0163O13 mRNA, complete cds. |
| GenBank | KJ727726 | 1e-108 | KJ727726.1 Zea mays clone pUT5666 LOB transcription factor (LOB11) mRNA, partial cds. |
