PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12337A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 583aa    MW: 64555.7 Da    PI: 4.7988
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12337AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13380427355
                                HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                ++h + ErrRR+++N+ f  L++l+P+        K++Ka+iL +++ Y+k+L+
  Oropetium_20150105_12337A 380 KNHVMSERRRREKLNEMFLILKSLVPTiH------KVDKASILAETIAYLKELE 427
                                5899***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.4E-4821199IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.24377426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-18380441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-15380431No hitNo description
Gene3DG3DSA:4.10.280.107.0E-17381437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10381427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-16383432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MALPAASSRL EEEARPPGKH LRNQLVAAVR SINWTYALFW SISTTHPGVL TWTDGFYNGE  60
IKTRKISNSA ELTPEQLVMQ RSEQLRELYM SLLSGECDHR AARPVGALSP EELGETEWYY  120
VVCMTYAFRP GQGLPGRSFT SNEHVWLCNA HLADSKTFPR ALLAKTIVCI PLMSGVLELG  180
TTDSVTEDSD LIRRITTSFW ELQFPVCTET EEPCSSSSGN VETDDDPNAF EEDLDRYNVM  240
ETTVITKEGE LGEVDMLSSG CLEHVTNEID EFFSLCEELD VQPLKDDWIM DGSLEVPSSP  300
EGAPGATNDA AGNNNATNTP ADRMTSFMAW TGTDSDEAAE VPVVIGESQK LLKKVVAGGA  360
WESSGGATNT TRSTQESGIK NHVMSERRRR EKLNEMFLIL KSLVPTIHKV DKASILAETI  420
AYLKELERRV QELESTISRE HIISRPSELR LKRGRCNNEI VEKRVSGPKR KKPSSESELS  480
VSDNGTEERE HHWVLSKDGT SNVTVTVTNK EVLLEVHCQW EELLMTRVFD AMKTLHLDVL  540
SVQASAPDGF MGLKIRAQSA SSAATVLPRM ISEAVRKAIG KT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-21211999192Transcription factor MYC3
4rqw_B5e-21211999192Transcription factor MYC3
4rs9_A5e-21211999192Transcription factor MYC3
4yz6_A5e-21211999192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385390ERRRRE
2386391RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12337A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5423117e-61AY542311.1 Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier, hypothetical protein, putative NAM protein, putative cis-zeatin O-glucosyltransferases, putative small nuclear ribonucleoprotein, putative cis-zeatin O-glucosyltransferase, putative glutathione peroxidase, putative copper-exporting ATPases, putative serine/threonine dehydratase, and putative actin depolymerizing factor genes, complete cds; and hypothetical protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823475.10.0anthocyanin regulatory R-S protein-like isoform X2
SwissprotP135260.0ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLA0A2T7CYI40.0A0A2T7CYI4_9POAL; Uncharacterized protein
STRINGSi000845m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.34e-60bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]