PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12311A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 565aa    MW: 59662.1 Da    PI: 6.9863
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12311AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001791108219
                                EETTTTEEESSHHHHHHH CS
                    zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                                +C++Cgk F++++++  H
  Oropetium_20150105_12311A  91 VCKNCGKEFTSWELFLEH 108
                                7**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.62E-5532No hitNo description
PROSITE profilePS501579.93835IPR007087Zinc finger, C2H2
SMARTSM003550.96830IPR015880Zinc finger, C2H2-like
PfamPF139120.002930IPR007087Zinc finger, C2H2
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
SMARTSM0035524090110IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.9E-8260283No hitNo description
PROSITE profilePS5015710.221261288IPR007087Zinc finger, C2H2
SMARTSM003550.13261283IPR015880Zinc finger, C2H2-like
PfamPF139124.5E-9261285IPR007087Zinc finger, C2H2
PROSITE patternPS000280263283IPR007087Zinc finger, C2H2
SuperFamilySSF576675.9E-8375402No hitNo description
SMARTSM003553.7380402IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182380402IPR007087Zinc finger, C2H2
PfamPF139124.7E-11380403IPR007087Zinc finger, C2H2
PROSITE patternPS000280382402IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MPSPEYKHFC RVCNKGFTCG SALGGHMRAH GASDDVMFAV DDEDSPGDEP AARWRGGGSS  60
DERHHWDGVG TSTHAYALRA NPNRLVRSCQ VCKNCGKEFT SWELFLEHGK CSSDDDEARA  120
EADGSPRSSS LISXXXXXXX XXXXXPAVAA AWSKGKRSRR VKLMAEASRR CASGEEEEDL  180
ANCLVMLSSS ANVEHAASVV TRTKNQQEPS SASANSKDGD RGPQLLQPMS FLXXXXXXXX  240
XLPSSAPAMH YAASPAPRGM FECKACKKVF TSHQALGGHR ASHKKVKGCF AARFESNNVV  300
TETPSHAATT ATDPNNDSGK AAAVEATPDA KTRIYTAASA EGDRNVGTSE TAALSMSLAP  360
ITPFNVAAAP PQSKKNAKMH ECSVCHRLFT SGQALGGHKR CHWLTTSSTA DPVASFTVPP  420
LTEDFVGAVR HHLMLRPMAD APPEPALDLT IAAKPSPSSQ TTAPSSIAFH LDASAQPVLH  480
LQSPAVVPGN NASHWNKAST TSGNDAAVAA AASTAAEDEA DSTVVKRARL TDLKDAVRMD  540
GEATEPWLQV GIGSSSAGGD DKNT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12311A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3762541e-34AK376254.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3119D16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825379.10.0zinc finger protein ZAT4-like
TrEMBLA0A1E5WGG60.0A0A1E5WGG6_9POAL; Uncharacterized protein
STRINGSi012008m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.12e-15C2H2-like zinc finger protein