PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12305A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family SBP
Protein Properties Length: 354aa    MW: 37179.8 Da    PI: 8.8234
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12305AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP69.28e-22112159148
                                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
                        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                                +Cqv+gC++ l+  keyhrrhkvCevhskap v+v g eqrfCqqCsr
  Oropetium_20150105_12305A 112 RCQVDGCHVALAGSKEYHRRHKVCEVHSKAPRVVVLGAEQRFCQQCSR 159
                                6**********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-23107159IPR004333Transcription factor, SBP-box
PROSITE profilePS5114118.691110187IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.14E-20111159IPR004333Transcription factor, SBP-box
PfamPF031108.6E-18113159IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEGNSGTATP AWDLGMMHWA PAGSGYPDPF VLRAGGGEPS RDGPRQQKEH QTWLNLGKQP  60
CCWTTGGCPV PPQPSWGQVR GSNDGGSGGT TAAAESKKKE KAASAAAAAV PRCQVDGCHV  120
ALAGSKEYHR RHKVCEVHSK APRVVVLGAE QRFCQQCSRS VFVINQQCIS FLCDFLFPSG  180
ALILKRAVCK RVPAGLVAFG HGGFPSSPAG ALSLLSSARG GXXXXXXXXX XXXXXXXXXX  240
XXXXXXENRL LAWQFFSDRS PGRLALFPGE VPGWHTAPLP GGGAAGRYSF VEASGTGHTT  300
LDLMQTPVAS SAGAPPFRPV PERAARTANK DGESGCVSDG WASVEGPPGR VVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A7e-16113159652squamosa promoter-binding protein-like 12
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12305A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0542382e-59BT054238.1 Zea mays full-length cDNA clone ZM_BFb0189E24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446904.12e-53squamosa promoter-binding-like protein 7
TrEMBLA0A0A9F9311e-82A0A0A9F931_ARUDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103033439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.43e-20squamosa promoter binding protein-like 10