 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_12296A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
MYB |
| Protein Properties |
Length: 329aa MW: 36602.3 Da PI: 9.5778 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_12296A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 34.2 | 5.7e-11 | 23 | 68 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g+W +eEd l + v+ +G+++W++I ++ + Rt+k+c++rw +
Oropetium_20150105_12296A 23 KGPWMEEEDAVLREHVRVHGPRDWSSIRSEGLLPRTGKSCRLRWVN 68
79*************************9886677**********87 PP
|
| 2 | Myb_DNA-binding | 37.6 | 4.9e-12 | 79 | 119 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
+++ +E+ +d+ +++G++ W+ Ia++++ gRt++++k++w
Oropetium_20150105_12296A 79 KFSSDEERVVLDLQARFGNK-WAMIAAYLP-GRTDNDVKNFWS 119
799*****************.*********.***********5 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 329 aa
Download sequence Send
to blast |
MARAPVGARR RARAADGWEA VRKGPWMEEE DAVLREHVRV HGPRDWSSIR SEGLLPRTGK 60
SCRLRWVNKL RPNLKSCCKF SSDEERVVLD LQARFGNKWA MIAAYLPGRT DNDVKNFWST 120
RQKRLARLMS PLRPRQFRKN LRLEKAAASS SPESRLAPDP ILETIPLEGS SSGDQFHART 180
AFRNPQKSEQ VPYDQTGSQL FGFGGAPPPV ALATDIQATS SASLWPPQLQ LYPPPYPLLD 240
FPGTWGSSGM APGFVSAGAP YDFAYHQEQF SMMQSSLMTS PFFGMNDGVK IEHRGPPDQF 300
DDLPPDLYNN SADQLPPASS PSRTISDF*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000305}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL663000 | 1e-39 | AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence. |
| GenBank | AL731613 | 1e-39 | AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence. |
| GenBank | AP014960 | 1e-39 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012612 | 1e-39 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
| GenBank | CR855218 | 1e-39 | CR855218.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106P14, complete sequence. |
