PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12245A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Trihelix
Protein Properties Length: 750aa    MW: 80877.8 Da    PI: 8.3039
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12245AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix98.84.5e-31102186187
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                rW+++e+laLi++r+em+ ++r++ lk+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f++
  Oropetium_20150105_12245A 102 RWPREETLALIRIRSEMDATFRDATLKGPLWEDVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFSE 183
                                8*********************************************************************866665..****** PP

                   trihelix  85 lea 87 
                                lea
  Oropetium_20150105_12245A 184 LEA 186
                                985 PP
2trihelix108.83.6e-34492577187
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                rW+k ev+aLi++r ++++r++++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+q
  Oropetium_20150105_12245A 492 RWPKAEVHALIQLRMDLDTRYQETGPKGPLWEDISAGMRRLGYSRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQ 574
                                8*********************************************************************8.99********** PP

                   trihelix  85 lea 87 
                                lea
  Oropetium_20150105_12245A 575 LEA 577
                                *85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.1E-499161IPR001005SANT/Myb domain
CDDcd122035.62E-31101166No hitNo description
PROSITE profilePS500907.039101159IPR017877Myb-like domain
PfamPF138374.6E-22101187No hitNo description
PROSITE profilePS500907.224485549IPR017877Myb-like domain
SMARTSM007170.0031489551IPR001005SANT/Myb domain
PfamPF138373.0E-23491578No hitNo description
CDDcd122038.46E-30491556No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MQQHQGGGSP YGAPLPPPPD MGRFSPPAAS AAMPLSSRPP SSARPQQQQQ LTTSYEDLAA  60
SASGAGGGAA GAGGFPDDEM LGDAGAGSSG GGTVGSVGGG NRWPREETLA LIRIRSEMDA  120
TFRDATLKGP LWEDVSRKLA ELGYKRSAKK CKEKFENVHK YYKRTKEGRA GRQDGKSYRF  180
FSELEALHAA GGAAPQQHHL PPPSSTQPPH LLAFGAPVXX XXXXXXXXXX LPGPMQPAPI  240
SSAAPAPAPR LDLPPQPPLN LQGLGFSSMS DSDGSDSESD DDDMTAETGG SQDRLGKRKR  300
DGGSKKMMNF FEGLMQQVVE RQEEAQRRFL ETMERREAER TAREEAWRRQ EVARLNREQD  360
QLAQERAAAA SRDAAIIAFL QRIGGHSVQL PTAVVVPMPT QMHVQTNPPP PKQHPRQHQT  420
PPPAQPKPIS APPIQQQPPP QQKHKEASRH DAASSTPRSA PPTSLELVPV SEQHVVDSGL  480
GGEGGSAASS SRWPKAEVHA LIQLRMDLDT RYQETGPKGP LWEDISAGMR RLGYSRSSKR  540
CKEKWENINK YYKKVKESNK KRPEDSKTCP YFHQLEAIYR KKQLSGASGV NVVNAAPVTA  600
ATPPTFPDQV VQSRQEIEGK NVNDEKRNNG GSGGDAQVPT GNGETSPTTT DALDADCGAK  660
KPEDIVRELT ERPPRELTAD ETDSDEYTXX XXXXXXXDGK MQYRIQFQRP NSGGTTNAAP  720
APPATTAAPA VPAPASAPTT TNTFAAMVQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144152KRSAKKCKE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12245A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0550331e-108BT055033.1 Zea mays full-length cDNA clone ZM_BFc0059A16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001344790.10.0uncharacterized LOC100279868 isoform 2
TrEMBLA0A3L6FSC20.0A0A3L6FSC2_MAIZE; Trihelix transcription factor GTL1
STRINGGRMZM2G016649_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.16e-40GT-2-like 1