 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_11810A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 228aa MW: 24871.2 Da PI: 9.8322 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_11810A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57.9 | 1.7e-18 | 77 | 130 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+ +++keq + Lee F+ n++++ +++e LA++l+L rqV vWFqNrRa+ k
Oropetium_20150105_11810A 77 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAANLKLRPRQVEVWFQNRRARTK 130
67789***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 122.2 | 2.6e-39 | 77 | 164 | 2 | 90 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85
kk+rlskeq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL++eve
Oropetium_20150105_11810A 77 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAANLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVE 160
9*********************************************************************************** PP
HD-ZIP_I/II 86 eLree 90
eLr +
Oropetium_20150105_11810A 161 ELR-A 164
**9.4 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 228 aa
Download sequence Send
to blast |
MGATSPSASG LELTMAVPGL SSSSGSEGSG CNNGNTGNVR VDLDMNQPAS GGEEEFPMGS 60
VDEDEEERGS GGPHRPKKLR LSKEQSRLLE ESFRLNHTLT PKQKEALAAN LKLRPRQVEV 120
WFQNRRARTK LKQTEMECEY LKRCFGSLTE ENRRLQREVE ELRAIRVAPP TVLSPHTRRP 180
LIPASALTMC PRCERITAPS GPAAARTARP APAAVPSFQP RRPSAAF*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 124 | 132 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT062688 | 0.0 | BT062688.2 Zea mays full-length cDNA clone ZM_BFb0333H18 mRNA, complete cds. |
| GenBank | EU966190 | 0.0 | EU966190.1 Zea mays clone 292384 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds. |
