PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11404A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 377aa    MW: 39889.2 Da    PI: 8.2411
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11404AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.6e-11153195854
                                HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 Er+RR+r+++++e Lr l+P      +k  +Ka++  +A++YI+ L
  Oropetium_20150105_11404A 153 LERQRRQRVKEKYEGLRALIPGV----DKQTDKATMINEAINYIRVL 195
                                7*********************7....688**************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.922145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-13151215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-14151210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-12151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-8152195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.69E-6160200No hitNo description
SuperFamilySSF550211.42E-5296353No hitNo description
Gene3DG3DSA:3.30.70.2607.3E-4297349No hitNo description
PROSITE profilePS516718.78298376IPR002912ACT domain
CDDcd048736.16E-5299341No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAHQHDDGGH HGGGTRGASD GNRSTTTPPQ PATATTKILP WLLRETIDYK SVWTPVPFGR  60
ANADVVGKGK EVVVVVPSVK QQHGGTVAEG DRTDAAVAAA QGKISSGVDD VMASGVVDDV  120
TKGKGKAVVA APPTNGGGNQ VLLPGCIDQS RLLERQRRQR VKEKYEGLRA LIPGVDKQTD  180
KATMINEAIN YIRVLEDIVQ NLERRKQELA LAREAAAAIA AEAAASSSSS VTPPGGGAAQ  240
QQGAAVALAP YPLLPQGWWW LPKQRPQQQP AAAAPVRFGF QTWTGANVVL NVSGDDAYIA  300
VCAARRPGVL VMVVSVLHKH HIDVVTAQIA SDQGRTLFSV YTRVNMEEIW QLDPEPPAAA  360
DVFKLAVSEI IVWLSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11404A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-10bHLH family protein