PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11403A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 341aa    MW: 35477.8 Da    PI: 9.4919
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11403AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11138185455
                                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                 h + Er RR+r+++ f+ L+  lP+ +     +K +Ka+i+ +A ++Ik Lq
  Oropetium_20150105_11403A 138 PHIITERERRKRMKNMFADLQAFLPNiP-----EKTDKATIVLEAFNFIKALQ 185
                                58999*********************88.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-15131196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.74E-12132185No hitNo description
PROSITE profilePS5088814.011134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-9138185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-13138198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-9140190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAQDASHGHE QVADASSGDG TPPPATDSAG TLSPGKNSNS NSGSSNGIPV AEDAASKGTK  60
NKDDVIVEEP PADASASTGS THSSGAAGQS KGKSSSSAEV AAATDDDYNS VFKGKGKVAE  120
CDGKGAGASD RKRKQQMPHI ITERERRKRM KNMFADLQAF LPNIPEKTDK ATIVLEAFNF  180
IKALQGTVAK LEKRKQDVAL AQRATAVANL EAAALAPPPR NAAQTMTTRL PPLPQGWSWL  240
PKQQPQKPAV AAAAAATSAP PAGFQSWSGS NVALSVSRDD AFITVCAPRR AAVLSLVLSV  300
LEKHRVDVIT VQVASDVGRC MFTLHARVNT YPALCSSSVI V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131148KRKQQMPHIITERERRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11403A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.15e-15bHLH family protein