PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_11009A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 373aa MW: 40279.9 Da PI: 7.1527

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_11009A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	30.4	1.1e-09	31	128	31	126
NAM 31 eevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkya....tgkrknratksgyWkatgkdkevlskkgelvglkktLvf 108 ++ +++ ++y +eP L + +fF+++ k+++ ++ r++ra+ g W + +++v++ +g ++g + L + Oropetium_20150105_11009A 31 HQSFASWEVYACEPGVLXxXxXXXXXXGDRFFFTTTCKRQPqeagKSVRAHRAAGPGSWYSHSATTDVTDGDGVKIGERSKLPY 114 24488899*******8332333344478999998888873333455999999************************** PP NAM 109 ykgrapkgektdWvmhey 126 + g +tdW+m+e Oropetium_20150105_11009A 115 K----KGGLSTDWLMDEV 128 8....568899**995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	11.35	1	151	IPR003441	NAC domain
SuperFamily	SSF101941	4.05E-10	33	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MPVNQRETIW NWNPAAKPKD RITTENVRHN HQSFASWEVY ACEPGVLXXX XXXXXXXGDR 60 FFFTTTCKRQ PQEAGKSVRA HRAAGPGSWY SHSATTDVTD GDGVKIGERS KLPYKKGGLS 120 TDWLMDEVSS CHPGTVVGGD RQYVFCKMYV SLRAAADSAA RQESDAXXXX XXXXXXXPPP 180 VEPAVATPNK RSAQAPPIVA PPRKRIRGAA ANTTADPYKT SVVVVPTPPE DPAVTAPNKR 240 SAPPMMIAKT QCGKRVRGAP VAPTLPPPPA GFATPLPSPR PGTPGSDTIP TTLQPGRSPA 300 PAAPRPSCQQ QPPAPLDLLS NEDPAQTEDD DLNQFASLLE DSLEVIEEEH QVPVQAEDEH 360 RAPSTKNQEP SR*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MPVNQRETIW NWNPAAKPKD RITTENVRHN HQSFASWEVY ACEPGVLXXX XXXXXXXGDR  60
FFFTTTCKRQ PQEAGKSVRA HRAAGPGSWY SHSATTDVTD GDGVKIGERS KLPYKKGGLS  120
TDWLMDEVSS CHPGTVVGGD RQYVFCKMYV SLRAAADSAA RQESDAXXXX XXXXXXXPPP  180
VEPAVATPNK RSAQAPPIVA PPRKRIRGAA ANTTADPYKT SVVVVPTPPE DPAVTAPNKR  240
SAPPMMIAKT QCGKRVRGAP VAPTLPPPPA GFATPLPSPR PGTPGSDTIP TTLQPGRSPA  300
PAAPRPSCQQ QPPAPLDLLS NEDPAQTEDD DLNQFASLLE DSLEVIEEEH QVPVQAEDEH  360
RAPSTKNQEP SR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_11009A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1832	27	99

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_11009A