PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11005A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 582aa    MW: 61835.6 Da    PI: 6.8256
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11005AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.81.6e-17131412126
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvkaeek....ewyfFskrdkkya....tgkrkn 75 
                                  Gf+F+P+  ++v++yL + ++g+ ++++    ++ +d+y++eP  L ++ +   +    + +fFs+ + + +    + +r+ 
  Oropetium_20150105_11005A  13 HLGFHFDPKPRDVVTYYLPRLIAGELMHVSIRpyVHAADVYECEPDVLAARSRP--TpfagDRFFFSTCKLQPRkmagKASRAV 94 
                                57***********************9777553359999**********843322..2233367999876543332223677999 PP

                        NAM  76 ratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                                ra+  g W+++  +++v++ +g ++g  + L +     ++g  tdW+m+e 
  Oropetium_20150105_11005A  95 RAAGPGSWHTQSATTDVTNGEGVKIGEVRKLRYK----KNGAFTDWLMDEV 141
                                9999****************************97....78899*****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-1910165IPR003441NAC domain
PROSITE profilePS5100522.22512165IPR003441NAC domain
PfamPF023659.3E-1015141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MAPPPQPIES ALHLGFHFDP KPRDVVTYYL PRLIAGELMH VSIRPYVHAA DVYECEPDVL  60
AARSRPTPFA GDRFFFSTCK LQPRKMAGKA SRAVRAAGPG SWHTQSATTD VTNGEGVKIG  120
EVRKLRYKKN GAFTDWLMDE VSICSEGPDV AVNRQQPVFC KIYVSPRAKT DPSPTSASAG  180
QEADAAIGVA PPPPPPPPEK AVTAHKKRPA AAPPVAQPPS TKRIRGTADT TASVIPPPSF  240
PSSSRPCVPP TAVRPASAVA PAIVDRPRYM PLQAPAPRRY LPHQPSTRTS TVTPTSSRPP  300
LAVTTASTMQ SPSFPSSSRP CVPPTAAPPA SSAVAPSILD RPCYMPLQAP APRRHLPHHQ  360
PSTRTSSVAP TSRPPVAVTA ASTMQSPSFP SSSRPRVAPT TGCTASAVAP VIAPVIHPVV  420
RRACHTPVPE PAPRHYATLH SSSIVHTTTP APAPVATRDP FCTESSPAAA QEDDDDDDVE  480
FAKSLADALE LEQAEVEVPA AEAEEDGGDD DDDDFAKSLG DSLEQAEGEA QAAEDEDDTE  540
DDLFALPKAA KNQQVHKKRE PFEFDPTVGR KKTPMMSAFY A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11005A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.19e-11NAC domain containing protein 63